Gene detail

Detailed information of XP_032230523.2 in Nematostella vectensis

Genomic Location: NC_064034.1:3075550...3080583
NR annotation: XP_032230523.2, zinc transporter 1 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032374632.2

TGTAGCAAATTATCGCTTTCACATCCGGAAAAATATTCGACAAAAGGAAAGGGTCAACATTTTGATCGggtataagaTGCCGACAAAGAAAGCTCTAAAGAAAGCCCTTATTGGGAAGACTGGCAGCGTTCTGTCCATGCTTGCCCTAACAAGCAGCTTCTTCTTGGTGGAACTCATTGTGGGATATGCCACAAACTCGATGGCACTGGTGGCAGACTCCTTTCACATGTTATCCGATGTAATGTCACTGATTATTGGCTACTTTGCCTTGAGGTACTCTAAAAAGAGTCAAAGAACTGAACGAAATACATTTGGTTGGCAGCGAGCTGAAGTCCTTGGCGCCCTAGTGAATGCAGTTTTTCTCATAGCACTCTGCTTTTCTATCTTGGTAGAGTCCTTGAAGCGTATAGTCGAAGTAGAACCAATTCACAACGTGAACCTTTTACTTATAGTTGGTGCTGCAGGACTGTTTATCAACCTAATAGGGCTGTTGATGTTTCATCGTCATGGCCATGGGCATAGCCATGGGGGACATGGGCACGGACATAGTCATGGACTACCCCCGGCGGCGGCCAATGGCCTGGTCATCCTCCCAGGAGAAGAAAACAGCATCAACCACTCTTCCGGATCACTCACAGATGACCATGGTGCTAAGAATGGTCATGTTCACGGAGGTGAGGAGGCTGTCTCCTCACCACTCACTGGAAAACAAACCTCCAGCGCGCAGCTGAACATGCGAGCAGTCTACCTTCATGTCCTTGGTGATGCCCTGGGCTCTGTCATCGTCATGGTGAGCGGCTTCATTATCAAGTACGCATCAGGGAAGTGGACCTTATATGTGGACCCTGGCATGAGTATACTGTTGGTCTGTCTGATCCTGAGAACTTCCATCCCATTGATGCGTGAGTCCTCACTCATTCTGCTGCAAACTGTACCAACTCACATAAAGATTAAGGAAGTTCAAGATAGACTGTTGGACTACGTTGATGGTGTGTTGAGTGTCCATGAGTTCCATGTATGGCAGCTAGCAGGAGACAAGATTATAGCATCAGCGCACATCACTTGTCACACACCAGATGAGTACATGGCTATAGCTAACCAAATCAAGCAGTTTTTTCACAATGAAGGCATTCACTCAACTACCATCCAACCAGAGTTTGTAGAGGACACCTTGAAGAAGGAGGAATGTGTCTTGGCTTGTGGGGAGTCAGCGAGCTGTGCAGCTCAAAAGTGCTGCACAACTGAAGCAGACTTACGAAAGAGGGTTTCATCAACAAAGGATGAGAGTGAGATGCAGGATGCTGACAAGTCATCAAACCTTCAACATGAGTCTGTAGTTTGAATAGTTCATTCTAATTGTAGTAGCACACATTTTTTGAAAGTCAAGGaacaaattattttattagaTATATATTAGTTTATTGATTATTTGTGTGGATGACATATTTTTTACTAAACAATTGTGATATGGGTTGTCAGAACATCAGACTTCCTTCTTCTAAACCCAACGTTTAATCAAATGTATAAACATGTTTACAAAAATATGACTTCCTTATGATGTCTTAAAGAAACCCAGCAAACTCAAAATGGACATGAAGGATGGGGGCTCTCTGATGGTAATAAAACCCTGTCATGAGATCATGAATGCGCACACAAACCAAGCTTATAGTACAAGAAAACATATGGATGAGATTTATGAAATATTCGTATTCGGACACAAATCgtttaataatttatttagtATTATACAGCCATTCGTACAAGTGCTGATTGGGGCATAAATTCTACAGAGAGTAGAGCTCTATTGAACAATCTCGTTGAGCTTACACAGCAAGAATGATAGCATTGGTTTGAATCTGCATCAATGCTGTAGAGCTTTGAAAAGATGGAAAAGCGGTGTTGACGCAAAGAGCAAGTTTCTTCAATGGTTTGAATCTGCATCAATACTGTAGAGCTTTGAAAAGATCGAAAAGCGGTGTTGATGCACAGAGCAAGTTTCTTCATATACACCATATGTTATCTTGTACTGTATGCTCAAAAATTAGTAGCAAACATTTTTTGAGAgttaaagaaaataattttttaattaGATATATATTAGTTTATTGATTATTTATGtagattgtattttttatggaaGAATAGTGCTATAGAGGTGGCTTTGCTTTTTTTGGCCTATATGTTTACACACCAACAAATAATATAACACAAAAGTTTTGTTGGAATTACATGCTGCTCTTGATAACTAAAATTCTATTTACCAATATTTATTGTCCCTACGCATCCCTACAAATCGCTGCATGTTATATGCAATGATtgtataaaagaaaataactctttttttatttttttattttacagactCTGGCTATAATGGCAGGGATTTATGATTTCACAGAGAAGGGCTCCAACGCGAGACCCTAGCTAAACAGTGAAACAACATTAAAAGATGTTAAGTTTAAAAAACTAACAAatgttggaaaaaaaaaactttttagcATTGAGTGTTACCTGTGATTGATCAGGCCTTCTAGTAAGATCATGATTAGGAGCTTGTGTCGTTGAATCAAAACAACCTCAAGGATTTTTATACTATGTGCAGCTCAGAAATACTAATGATAAGTTGGCAACTCATTTGCAGTAATCAATGCCTGTTTTGAATGCTAGATTTCTTGCAGTCCTTTTAGCCAACACAAGGATTTTATGATGATTCGTTAGGCATTGTCttgaatttaatttatttttttatgttatcaGGTTTCTTTGTATTTGATCGCAGCGTAGCACTCACTTCTATTCAGTGTTTTACTGTGCAATTAAGGGCACAAGTAGGATTTCGGACACATATCACATGCGAGTTATGTATTTTCCCCTATGAAATTTGATGTATGAAATATGGGTTCAATTGCTGTTTAGAAGTTTAATTTATTGAAATAGTTATATTTACAGTATTTCTCAATAGcttgtgaaaataaaataaaacaaatgttttccaATCCGGATTTctaggaaaaaaataggccggcggctttttattttatctccagtatttttattattgtctTCCAAAGGCATCGATCTACCCACAGTGGACCTAGGACCTGCATCTTTCTACACTGTCGACTATGACGCGGATGTTTTACTCAATGACGAATGCGAAGCGAATGTCCAAACATGGCGAACAAAGAGAAATATGGGATTTTGGTCATTTAATCTTTTAATGGTAAGTCAAGGCCTTTGACTGCCAAGTGGTGATATgtctataaaaaaaagcataatTTATCAGCATATGTGTGAGATGTTCGCGGTCTACTTGGTCCTGTCGGTTTATGGATTAGAGCATGGTAGCAACCAATCTAGTCTTAGTTAGTGTCATCAGTGTATGTAGTCTCTTTTGACAAATTACCTTGAAATATCTGTATGTTTTATGCAGAATTGCTTAATAAAGATAGTGTCTTGATGGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R6K2	Proton-coupled zinc antiporter SLC30A1 OS=Macaca fascicularis OX=9541 GN=SLC30A1 PE=2 SV=1
Q60738	Proton-coupled zinc antiporter SLC30A1 OS=Mus musculus OX=10090 GN=Slc30a1 PE=1 SV=1
Q9Y6M5	Proton-coupled zinc antiporter SLC30A1 OS=Homo sapiens OX=9606 GN=SLC30A1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002043 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR036837 all species →	Homologous_superfamily	Cation efflux protein, cytoplasmic domain superfamily	Interproscan
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45820 all species →	FI23527P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0006882 all species →	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0010312 all species →	Biological Process	detoxification of zinc ion	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14688	SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032230523.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

19.0Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.75	13.55
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	7.72	10.29
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.96	10.57
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.16	14.41
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.37	8.15
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	8.84	16.02
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.07	11.35
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	12.73	16.37
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	12.51	18.95
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	15.90	17.98
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	16.11	17.45
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	14.65	18.13
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.85	13.56
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	9.88	17.66
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	8.88	10.58
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	5.21	15.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.55
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.03
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.68
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.29
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.56
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.30
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.57
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.52
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.80
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.41
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.90
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.17
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.15
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.42
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.53
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.02
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	10.51
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.35
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.86
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	16.37
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.58
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.23
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.95
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.58
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.98
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.27
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	13.44
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.45
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.63
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.24
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.13
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.27
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.54
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.56
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.31
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.68
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.66
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.00
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.58
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.06
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.99
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	15.62
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.