Genomic Location: NC_064034.1:15300239...15328746
NR annotation: XP_032230599.2, nipped-B-like protein B isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5506309 |
| Transcript |
| rna-XM_032374708.2 |
| Protein |
| XP_032230599.2 |
| UniProt accession | Description |
|---|---|
| F1QBY1 | Nipped-B-like protein B OS=Danio rerio OX=7955 GN=nipblb PE=2 SV=1 |
| Q6KCD5 | Nipped-B-like protein OS=Mus musculus OX=10090 GN=Nipbl PE=1 SV=1 |
| Q6KC79 | Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002809 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12830 all species → | Nipped-B_C | Sister chromatid cohesion C-terminus | Repeat | Interproscan |
| PF12765 all species → | Cohesin_HEAT | HEAT repeat associated with sister chromatid cohesion | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR033031 all species → | Family | Scc2/Nipped-B family | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR024986 all species → | Domain | Sister chromatid cohesion C-terminal domain | Interproscan |
| IPR026003 all species → | Repeat | HEAT repeat associated with sister chromatid cohesion protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21704 all species → | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0010468 all species → | Biological Process | regulation of gene expression | Interproscan |
| GO:0034087 all species → | Biological Process | establishment of mitotic sister chromatid cohesion | Interproscan |
| GO:0061780 all species → | Biological Process | obsolete mitotic cohesin loading | Interproscan |
| GO:0071169 all species → | Biological Process | establishment of protein localization to chromatin | Interproscan |
| GO:0090694 all species → | Cellular Component | Scc2-Scc4 cohesin loading complex | Interproscan |
| GO:1990414 all species → | Biological Process | replication-born double-strand break repair via sister chromatid exchange | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06672 | SCC2, NIPBL; cohesin loading factor subunit SCC2 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of XP_032230599.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
