Gene detail

Detailed information of XP_032230762.2 in Nematostella vectensis

Genomic Location: NC_064036.1:6472302...6491022
NR annotation: XP_032230762.2, uncharacterized protein LOC5506512 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5506512

ATGAGTGCGGAGGAGATAAAATACACCGTCAAACAGCCATCTAAAATCACTAGACTCAGCGAGCGCCCGAAGGACCCAAGACCTTCAGCATGGATCTCCGGAGTCAAATGGGTCTTCGCCTTCTTCCTCTCAATGTCCTTGCTCATCTGCATCGTTTCGAGTAAGATATCTCTTCTTTCCATCGCCATGTATTTTAATGCAACTCGTCTTCCAACCGGAGTTACCCATCCAGAGTATGGCGAGCAATCTCAGCCTGAGACTGTGTTTGTTATGCTAATTCTCGCGCTCATGATACCATTCGCGCTAACGTTCCTTCGATCGTGTTGGGTGAGCTTATTCAGAAGTTCTCATCTATGGCCGTCGAATTCTGCTTTGTTCTGGTGTGTAGTCTCGTCTGTGATCGAGGTGGCTGCATTGTGTTACTTCACCATCATCCCCCTAATGTACACGTCACTTCCGGCTACCTACTGTATCCTCATCTCCAATTCTGTGTTCTGTTTCCCTATCGCCTGGCACTTGTGGAAATTATGGAGGAACTTTAACGAGAACAGAAGGCTATTTTTCGCTACTCTGGCCTCACTCATTCTGGAACTAGGAAGCTTAGGAGTGCTAGCTTACAAGGTTAGCAGTGTACTAAACACGATGGGCATGTCCACACACAAGTCTGCAAGTATCATGGTGTTGCTACCCGCCTCTATGGTCCTGCTGTCGATTGCGTGGAGTCCCAAGGTACAAAAGAAGATGTTGGAGCCGCGAGGAGACCAATATGATGAACTTGATGCTAGAGAGGCGAGTATGCGAACCACCGCAGGGTTACCAGGTTCATCCGAGGGCGACCCTGCCCCGCCCGTGTTCACTCCTCAGACTGCAGCCCATTTGCTCTTGAGCGACGGGAAAAATGCACGAGGCAAATCAGCAATCATTACGAGTCTCATCAAGCTTATTATTACGCCCATCATAGCAGGACTCATCGCTTGGCCCTACGGCGTATTAGAAAATCTTGGGGATGTTCTTAGCAAAGGCTTCGGGGCTTTCACTTTTAACCATCTGGCCTTTCCGCATTTCCTGGCTCAGATTTTTACTAGTGTTGTTGGTTACATACTAGGATGGCTTGCCTGCAGCATGTGTCTACAAAAGATCGCATACGCATTGCCGCTGATCCTAGCAACCCCTGTCTCGCTGGCACTAGTCTTCATTCCAAAGATCTGTGCAAGTGATCGTGTGCCGATGAAATGCGAGTATGATGATGGATCTGAGTTGTATTACATAGTAGTGCTAGCCGCGTGCTTGTGGCTGGCTCAACTGTTATGGACAGGGTGTTTCATCTGGAAAGAGCAGACCTTCATTATGGCCAGAGAATCTTCTCTTTTCTGGATGCCGCTTTACAATGGCGTTTTCTTGGAACAGAACCTGCTACTCAACCGCAAAAATGTGATCACAGACGAGTTCCATGTGAACCAACGGGAAATCGCCAAGAACGCATGCGTATACATCTGCACGACCATGTACCACGAGACCGAGGAGGAGATGGAGCAGCTGCTACACTCACTCCACGACATCGACACCGCGAGAGCGGCATCCAAGAGGCAGTTCGAGTCGCACGTCTTCTTCGACGGGGCCGTCAAGGGGGAAGTACTCAACGACTTTGTGCTTCAACTAATTGCTCTTGTGCCTAAGACACTGAAGGTGAAAGTTGAAGCCGTGATGAAGATCAAGACACCATACGGGATGCAGTTCAGGTGGCGTCTGCCTGGAGGGATGCCTTTTCATATCCACCTCAAGGATAATCTAAAGGTCAAGAACAAGAAGCGCTGGAGCCAGGTCATGTACATGTCCTACATCCTGGACTACAAGGAGGGCACCATGGGTTCAACGGATGAGAACACGTATATTCTTGCTACCGACGCGGATGTCAGGTTTACCCATGGGGACGTACAGGCGTTACTCGATCTGCTTATGCGCGACCCGCGGGTCGGGGCGGTCTGCGGGCGCACACATCCTCTCGGGGTGGGCCCGATCGTCTGGTATCAAGTCTTTGATTACGCCATTGGTCACTGGTTCCAAAAAACAGCCAATCATGTGCTAGGTACAGTTCTCTGCTCTCCCGGATGTTTCAGCGCGTATCGATGCCTTGCAGTGCGTGACGTGTTACCGACGTACGCTACCGGTGTGACAACTTCCACGGACTTCCTCACTAAAGATATGGGAGAAGACCGCTGGTTCTGCACACTGATGGTTCAGAGCGGCTGGCGTCTTGAGTACTGCGCAGCCGCAGAAGACAGCACCTTTTGTCCTGACAACTTTGACGAGTTTTTCCGACAGAGACGACGCTGGATCCCGTCAACCCTTGCGAATCTGCTCCAGCTGATCAGCCAATGGAGGGTCACGACTGAGAATAATGACATGGTGTCTATTTGGTTCATTCTCTACCAGGCCCTCAACGTGGTCGCAACGCTAATATGTCCAGCAACTGTCATCCTGATCATCAGTGGCGCGCTCCACTACGCGCATCTGGGTGTTGAGGATGAATTAATACCTGCGGTCCTGTTGGTGCTTGTTTCCATCGGCTACGCCCTAGTCTGTCTTTACACAAAGCAGGAGTTCCAGCTGAAAGTAGCCAAGCTGCTGACGATCATCTTCGCCTTGATCATGGCGTTCGTAGTTGTGGGAATGGCTGCGCAGATCGCGATAGATCTCCAACTTAGATCAACGCCTAAACCGACAACTTCACCAGTGCCGACTGCTCTGGTCCCCACGACCCAGGCGACCACACCCATGAGTACAAGCACCGCTAAAACAGCGGTGGACAGACTACTGGCAGCCATCACCTCATCCTCCACCCCTGGGCCTACCGCCCCTTCAGGCACCTCGAGCCCCCTGCCCACCACGTCCTATGTCCCACTGAAGGACAGACTGCCAGCTGATGTCACAAGTCTGTATTTGGGCGGTCTGGTCGGAATCTTTTTAATCGCAGCTCTGCTGCACCCATTCGAAGCATTTTGTCTGGTTCATGGGATGTGGTATCTGCTTTGTTTGCCTTCGGGATACCTGTTGCTAATCATATACTCCGTGTGCAACGTGACCGACAGATCATGGGGTACTCGAGAGACAAAGGAGAAAAAGAGCGGTGCTGAGGTTCCATGGTACGAGGAGCTGTGGAAAACCATCAAGTATGTGTTCACGTGCTGTCGCCCGGCTGAACCAAATCCTGATCCCCAGGCCCCTGCAACCAACAACCAGACAGACAACCCGCCGTCCCAGTACGAGGATTCTTCGTCGTCGGAAACGAATGGTGTTCTTTCTGACGAGGAGCAGCCTCCTCTCCCCCTTAGCGACAGCTCCATCCAGTCAGCAGCTCCTCCAGAGGTGATGATCGATGAAACGCACAGTCCGTCTGCTACTCCGCCTATGCCAAAGTCTGTCCTCAAGCTGCGAAAGGCCGCCAGTTTGGACGCCGACAGTCCCGAGGCGCCAAAGTGGCGTTTTCCCGGGGAGAGGAAAGTTCGATTCGACACCAGACTCCCCAAGCTGTTAGCTGAGATGCCCGTGGAGGAATGGTTACCAGGAGAGCTCAAGGGCCTTTATTTGAAAAACTTCAAAGACAATGGATACGACAATGTGAGCTTCATCGCAGGAATGACCAATAAGGACCTGCGCGCGATTGGTATAAGCACAAGAGGGCACCGCATGCAGCTTGTTTACGCAATCGAGCGAATTCCACATGTCACGTTAAACGCCGATGTACCGGAGAGCGTGGAGGAATGGCTACACGAGCTGGGGCTCGAGTGCTACTGGGAATACTTCGTGCGGAATGGGTACAACGAGCCGCGTGTTTTGGAGGACCTCAAGGCCATGGACTTCACCACACTTAAGCAGACGCTTAAAGCGGACTTGAACATTAACAAGGCCGGGCATCTCACCAAGATGATCAGTGCAATAAAGAAATTGCAATATCCAACACCATCGGAAAGGGAGATTCGCCGAGCACGGGAGCTTGTGAAAGAAGCAGGGCACGTTATAGACATGGAGAAAAGCAACCAGGATGATGGAATGGAATTCAAGTTCTGGAAGGGTCTGAGAGAGGCGTGCTTGCTCCCTGAGTCCGCCATATTCGGCGCCGTGACCGAGCTCAAAGAGAAACTAGAAGACCTGCGCGATTCTATTCTTATGGTGTTTGCCATGACTAATGCCATCTGGATGATCTTAATGGTCACGTTAACGAAAACGCCTCAACTCAAAGTGTTAGGAACAGACGCCCTCGGTTTGGCTTTCCTCGCTATTTACGGCTTCATCATCGTTCTCCAGTTCTTAACCCTTATCTGGCATCGTCTCTCCACATGGTGTCACATGATCGCTCGCGCGCCCTGGACCCGAGGCCCCTATAAAATGGCATGGGCTTTCAGTGACGAAAACCTGGTGCCAGAGCCCACTCAAGCAGACCTGGAGAGAGTCCGTCGGCTCCGACACAAGCGCAGAAGAAGAAGTCGCCATTCCTCCAGTGATGCCCATCATGCACTGCTTTACAACTCGACTGAGCAAAGCTCCACTTCAAACCTGGAGCATTCTGGTCATACTATGGTGCTACCAGCTACGGCAATAGCCTGA

Transcript

rna-XM_032374871.2

GTTATTCCAGCTACTTCCGGTCAGTTGACCGATCAACAGGTCATATACTTTATACTACTTTTACTTCAGTTCGGGGAAGTCGAGCTCGATGTATGATATATATGAACACCAAAAGGAGCTGACAGGACATAGAGACGTATTCACAATATCAAAATGAGTGCGGAGGAGATAAAATACACCGTCAAACAGCCATCTAAAATCACTAGACTCAGCGAGCGCCCGAAGGACCCAAGACCTTCAGCATGGATCTCCGGAGTCAAATGGGTCTTCGCCTTCTTCCTCTCAATGTCCTTGCTCATCTGCATCGTTTCGAGTAAGATATCTCTTCTTTCCATCGCCATGTATTTTAATGCAACTCGTCTTCCAACCGGAGTTACCCATCCAGAGTATGGCGAGCAATCTCAGCCTGAGACTGTGTTTGTTATGCTAATTCTCGCGCTCATGATACCATTCGCGCTAACGTTCCTTCGATCGTGTTGGGTGAGCTTATTCAGAAGTTCTCATCTATGGCCGTCGAATTCTGCTTTGTTCTGGTGTGTAGTCTCGTCTGTGATCGAGGTGGCTGCATTGTGTTACTTCACCATCATCCCCCTAATGTACACGTCACTTCCGGCTACCTACTGTATCCTCATCTCCAATTCTGTGTTCTGTTTCCCTATCGCCTGGCACTTGTGGAAATTATGGAGGAACTTTAACGAGAACAGAAGGCTATTTTTCGCTACTCTGGCCTCACTCATTCTGGAACTAGGAAGCTTAGGAGTGCTAGCTTACAAGGTTAGCAGTGTACTAAACACGATGGGCATGTCCACACACAAGTCTGCAAGTATCATGGTGTTGCTACCCGCCTCTATGGTCCTGCTGTCGATTGCGTGGAGTCCCAAGGTACAAAAGAAGATGTTGGAGCCGCGAGGAGACCAATATGATGAACTTGATGCTAGAGAGGCGAGTATGCGAACCACCGCAGGGTTACCAGGTTCATCCGAGGGCGACCCTGCCCCGCCCGTGTTCACTCCTCAGACTGCAGCCCATTTGCTCTTGAGCGACGGGAAAAATGCACGAGGCAAATCAGCAATCATTACGAGTCTCATCAAGCTTATTATTACGCCCATCATAGCAGGACTCATCGCTTGGCCCTACGGCGTATTAGAAAATCTTGGGGATGTTCTTAGCAAAGGCTTCGGGGCTTTCACTTTTAACCATCTGGCCTTTCCGCATTTCCTGGCTCAGATTTTTACTAGTGTTGTTGGTTACATACTAGGATGGCTTGCCTGCAGCATGTGTCTACAAAAGATCGCATACGCATTGCCGCTGATCCTAGCAACCCCTGTCTCGCTGGCACTAGTCTTCATTCCAAAGATCTGTGCAAGTGATCGTGTGCCGATGAAATGCGAGTATGATGATGGATCTGAGTTGTATTACATAGTAGTGCTAGCCGCGTGCTTGTGGCTGGCTCAACTGTTATGGACAGGGTGTTTCATCTGGAAAGAGCAGACCTTCATTATGGCCAGAGAATCTTCTCTTTTCTGGATGCCGCTTTACAATGGCGTTTTCTTGGAACAGAACCTGCTACTCAACCGCAAAAATGTGATCACAGACGAGTTCCATGTGAACCAACGGGAAATCGCCAAGAACGCATGCGTATACATCTGCACGACCATGTACCACGAGACCGAGGAGGAGATGGAGCAGCTGCTACACTCACTCCACGACATCGACACCGCGAGAGCGGCATCCAAGAGGCAGTTCGAGTCGCACGTCTTCTTCGACGGGGCCGTCAAGGGGGAAGTACTCAACGACTTTGTGCTTCAACTAATTGCTCTTGTGCCTAAGACACTGAAGGTGAAAGTTGAAGCCGTGATGAAGATCAAGACACCATACGGGATGCAGTTCAGGTGGCGTCTGCCTGGAGGGATGCCTTTTCATATCCACCTCAAGGATAATCTAAAGGTCAAGAACAAGAAGCGCTGGAGCCAGGTCATGTACATGTCCTACATCCTGGACTACAAGGAGGGCACCATGGGTTCAACGGATGAGAACACGTATATTCTTGCTACCGACGCGGATGTCAGGTTTACCCATGGGGACGTACAGGCGTTACTCGATCTGCTTATGCGCGACCCGCGGGTCGGGGCGGTCTGCGGGCGCACACATCCTCTCGGGGTGGGCCCGATCGTCTGGTATCAAGTCTTTGATTACGCCATTGGTCACTGGTTCCAAAAAACAGCCAATCATGTGCTAGGTACAGTTCTCTGCTCTCCCGGATGTTTCAGCGCGTATCGATGCCTTGCAGTGCGTGACGTGTTACCGACGTACGCTACCGGTGTGACAACTTCCACGGACTTCCTCACTAAAGATATGGGAGAAGACCGCTGGTTCTGCACACTGATGGTTCAGAGCGGCTGGCGTCTTGAGTACTGCGCAGCCGCAGAAGACAGCACCTTTTGTCCTGACAACTTTGACGAGTTTTTCCGACAGAGACGACGCTGGATCCCGTCAACCCTTGCGAATCTGCTCCAGCTGATCAGCCAATGGAGGGTCACGACTGAGAATAATGACATGGTGTCTATTTGGTTCATTCTCTACCAGGCCCTCAACGTGGTCGCAACGCTAATATGTCCAGCAACTGTCATCCTGATCATCAGTGGCGCGCTCCACTACGCGCATCTGGGTGTTGAGGATGAATTAATACCTGCGGTCCTGTTGGTGCTTGTTTCCATCGGCTACGCCCTAGTCTGTCTTTACACAAAGCAGGAGTTCCAGCTGAAAGTAGCCAAGCTGCTGACGATCATCTTCGCCTTGATCATGGCGTTCGTAGTTGTGGGAATGGCTGCGCAGATCGCGATAGATCTCCAACTTAGATCAACGCCTAAACcgACAACTTCACCAGTGCCGACTGCTCTGGTCCCCACGACCCAGGCGACCACACCCATGAGTACAAGCACCGCTAAAACAGCGGTGGACAGACTACTGGCAGCCATCACCTCATCCTCCACCCCTGGGCCTACCGCCCCTTCAGGCACCTCGAGCCCCCTGCCCACCACGTCCTATGTCCCACTGAAGGACAGACTGCCAGCTGATGTCACAAGTCTGTATTTGGGCGGTCTGGTCGGAATCTTTTTAATCGCAGCTCTGCTGCACCCATTCGAAGCATTTTGTCTGGTTCATGGGATGTGGTATCTGCTTTGTTTGCCTTCGGGATACCTGTTGCTAATCATATACTCCGTGTGCAACGTGACCGACAGATCATGGGGTACTCGAGAGACAAAGGAGAAAAAGAGCGGTGCTGAGGTTCCATGGTACGAGGAGCTGTGGAAAACCATCAAGTATGTGTTCACGTGCTGTCGCCCGGCTGAACCAAATCCTGATCCCCAGGCCCCTGCAACCAACAACCAGACAGACAACCCGCCGTCCCAGTACGAGGATTCTTCGTCGTCGGAAACGAATGGTGTTCTTTCTGACGAGGAGCAGCCTCCTCTCCCCCTTAGCGACAGCTCCATCCAGTCAGCAGCTCCTCCAGAGGTGATGATCGATGAAACGCACAGTCCGTCTGCTACTCCGCCTATGCCAAAGTCTGTCCTCAAGCTGCGAAAGGCCGCCAGTTTGGACGCCGACAGTCCCGAGGCGCCAAAGTGGCGTTTTCCCGGGGAGAGGAAAGTTCGATTCGACACCAGACTCCCCAAGCTGTTAGCTGAGATGCCCGTGGAGGAATGGTTACCAGGAGAGCTCAAGGGCCTTTATTTGAAAAACTTCAAAGACAATGGATACGACAATGTGAGCTTCATCGCAGGAATGACCAATAAGGACCTGCGCGCGATTGGTATAAGCACAAGAGGGCACCGCATGCAGCTTGTTTACGCAATCGAGCGAATTCCACATGTCACGTTAAACGCCGATGTACCGGAGAGCGTGGAGGAATGGCTACACGAGCTGGGGCTCGAGTGCTACTGGGAATACTTCGTGCGGAATGGGTACAACGAGCCGCGTGTTTTGGAGGACCTCAAGGCCATGGACTTCACCACACTTAAGCAGACGCTTAAAGCGGACTTGAACATTAACAAGGCCGGGCATCTCACCAAGATGATCAGTGCAATAAAGAAATTGCAATATCCAACACCATCGGAAAGGGAGATTCGCCGAGCACGGGAGCTTGTGAAAGAAGCAGGGCACGTTATAGACATGGAGAAAAGCAACCAGGATGATGGAATGGAATTCAAGTTCTGGAAGGGTCTGAGAGAGGCGTGCTTGCTCCCTGAGTCCGCCATATTCGGCGCCGTGACCGAGCTCAAAGAGAAACTAGAAGACCTGCGCGATTCTATTCTTATGGTGTTTGCCATGACTAATGCCATCTGGATGATCTTAATGGTCACGTTAACGAAAACGCCTCAACTCAAAGTGTTAGGAACAGACGCCCTCGGTTTGGCTTTCCTCGCTATTTACGGCTTCATCATCGTTCTCCAGTTCTTAACCCTTATCTGGCATCGTCTCTCCACATGGTGTCACATGATCGCTCGCGCGCCCTGGACCCGAGGCCCCTATAAAATGGCATGGGCTTTCAGTGACGAAAACCTGGTGCCAGAGCCCACTCAAGCAGACCTGGAGAGAGTCCGTCGGCTCCGACACAAGCGCAGAAGAAGAAGTCGCCATTCCTCCAGTGATGCCCATCATGCACTGCTTTACAACTCGACTGAGCAAAGCTCCACTTCAAACCTGGAGCATTCTGGTCATACTATGGTGCTACCAGCTACGGCAATAGCCTGACAcccaacaacaactacaaagATAGCCTGACTTTAAACAAGGCCGGATCATCTTTCGTCGTATGAATCTTGCCATATTTTAAACCTCGAGCTGCTATAATCTTAATATTACAGGGTCGTAGCAGGCCTCAGGAATATTGTGGGGCAGTGGGGGgcagaaacataaagaaaatattggggggggggtcacaatacagaaacattaagaagatattgggggggggggggcacagccacgcccctactggtgatttccttataattttccAAAATATGGGGGGGGAcgacgtgcccccagtgccccaccctttgctacggccctgtattACCGATAAGATTTTCAGTGGCGTATCCAGCCTCCACCCCCCTCCATACGAAATGACATTTCTCAAATTGACCTTCCGTCATACACTTTAGATATTGGTACCCCTCTCGGgatgctcccccccccccctctttctctCAAGAGACCCTGGGTCCACCTGATTTTCTTTAGTTATGACCGCTTCTagcttaaaaataatattattttgaagAATTAAGAATACGTGACTGTTACTTGCTAAGCATTGATTTTTTGCAGATTTGCGCTGTGCTTACATTAGACACGAAGTCAGCGTACTTTGTCGTTACactaacaatttttatttgacaaCTATATTTGTTGGCATCTTACACAATTTTTCATGAgtgattatttttaaattgccGAGAAAAAGCAAACCTGCTAGTTTTTGAGCAGCTATAGTTGCCACATAAAAATTGGCGACTTTGCTCCATCTACactagcaaataaaaattgtcaacTAAAATTTGTTAGTGTAGATGTGGCTTTAATAGCCAGTCTCGTGATTTTTGAATAATATTTATTCGAGGATATCAAATTTAGCTAGGAGGAAACAatcaacaaacaacacaaggcGAGGAGTTTTTATTAAACCGTATTTTAGGGATCGTAGCGGGGTTGCCTATAATTTAAGTGAAATTAAGTATAAAAAGGTATAGTTGCATGATGACAGATTTATCTATATTTGttcattatcttttttttagaacattaCTCTTAATTTTCACTTTTAAGTGATGGTTAAAACCATCTTCCTATTGCTGATAAGTGAATAAATGTGTGAAAAATCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5EBQ8	Chitin synthase chs-2 OS=Caenorhabditis elegans OX=6239 GN=chs-2 PE=1 SV=1
Q8T5G8	Chitin synthase OS=Meloidogyne artiellia OX=42426 PE=1 SV=1
G5ECD6	Chitin synthase chs-1 OS=Caenorhabditis elegans OX=6239 GN=chs-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001011 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03142 all species →	Chitin_synth_2	Chitin synthase	Family	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR004835 all species →	Family	Chitin synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22914 all species →	CHITIN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004100 all species →	Molecular Function	chitin synthase activity	Interproscan
GO:0006038 all species →	Biological Process	obsolete cell wall chitin biosynthetic process	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0030428 all species →	Cellular Component	cell septum	Interproscan
GO:0071944 all species →	Cellular Component	cell periphery	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00698	CHS1; chitin synthase	EC:2.4.1.16	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032230762.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

28.7Max TPM

15.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	18.11	19.91
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	13.44	19.78
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	16.39	19.19
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	16.61	19.94
whole 6 week old aboral regenerate · regenerate uncut	3	3	14.12	16.30
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.77	21.35
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	18.80	20.00
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	15.15	15.75
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	9.42	16.42
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	14.42	15.28
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	14.14	16.52
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	20.93	28.71
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	18.20	20.64
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	12.59	19.94
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	20.06	23.77
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	5.51	16.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	19.91
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.95
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.47
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	19.78
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	12.27
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.28
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	19.19
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	16.12
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.87
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.94
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.24
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.65
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.30
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.64
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.42
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	21.35
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.95
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	20.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	19.28
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	17.12
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.75
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.71
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.98
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.42
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.83
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.28
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.03
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.97
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	16.52
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.65
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.26
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	28.71
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.84
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.24
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	20.64
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.65
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.31
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	19.94
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.82
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	23.77
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	21.81
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.59
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	16.54
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.