Detailed information of XP_032230819.2 in Nematostella vectensis

Genomic Location: NC_064036.1:17837652...17854389
NR annotation: XP_032230819.2, uncharacterized protein LOC5506556 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004863 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00169
all species →
PHPH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR037781
all species →
FamilySKAP familyInterproscan
IPR001849
all species →
DomainPleckstrin homology domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15129
all species →
SRC-ASSOCIATED ADAPTOR PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032230819.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032230819.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
46TPM > 0
16Conditions
30.7Max TPM
17.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 3 19.79 23.35
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 11.83 16.54
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 13.66 15.75
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 16.77 21.06
whole 6 week old aboral regenerate · regenerate uncut 3 3 9.99 11.60
whole 6 week old aboral regenerate · regenerate 4hpa 3 2 16.06 28.11
whole 6 week old aboral regenerate · regenerate 120hpa 3 3 16.54 19.20
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 19.15 21.17
whole 6 week old aboral regenerate · regenerate 24hpa 3 3 20.75 26.20
whole 6 week old aboral regenerate · regenerate 20hpa 3 3 26.74 30.70
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 23.23 25.46
whole 6 week old aboral regenerate · regenerate 72hpa 3 3 19.13 21.99
whole 6 week old aboral regenerate · regenerate 60hpa 3 3 16.07 16.88
whole 6 week old aboral regenerate · regenerate 48hpa 3 2 12.86 23.08
whole 6 week old aboral regenerate · regenerate 8hpa 3 3 16.60 18.81
whole 6 week old aboral regenerate · regenerate 12hpa 3 3 21.25 27.49

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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