Gene detail

Detailed information of XP_032230996.2 in Nematostella vectensis

Genomic Location: NC_064039.1:4424885...4433986
NR annotation: XP_032230996.2, protrudin isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032375105.2

GTATTGATGTGCCAAAAAAAACGATCCCACCCCGAAAGTTCTTGATTTGATGGcgtttttaatcatttttacCTTGAATAACGGATGAAATGCCTTGAAAACCGGCGAGCCAAATCAAGATGAATTGTACTATAACTATACAACACACATATTAGGATGTGTGAAAAAGACACAAGAAGAACCGATGAAAAAGCTGACGAGACTTCCGATAATGACTCCCGAGAGAAAACTCGTACGGTCAAGTTTGATATCGGAGAATTTGTACACACACACCGTAAACTAAAGCTTCTTTGCTCCTCATGGGTGGATCTGTATCGCAGAATAGTGCTAGTATTCAGCTGGCAGTCCCCAAAGACGTCATTTGTGTGGTTTATCATCTGTAGCTACCTTGCCTTTATATCACCTGTGTGTTTTCTGGCTTTCCCATTGGCATACATCAGCATTCTCCTTGTTAGCTCTGGTATTCAAAGAGCTGGGACACATAACAGTACACTCTTGGACAAGAGTAAATTAATCAAGAAAAAGGCTGAAGACAAGCTGAATTCTAGGCTTGCATTGGAGAAACAAGTTAAAGAGGATTTGAAGGACTGCATCTATCTGCTGTCTCAGATAGAATCATTGAGTAATGATGTATGCCTCATTCTTCAAGAAATTCACAAtgTATTTATATGGAAAGATACCAGAAAATCCATAATATGCTTGGTGATCTTGTTATTATTGATTGTTTTCCTGTTGCTGATGGCGTGGAGATGGGTGATGCTTATTACTGTCCTGTCACTATTTTGCCTAAACTCTGGTTTTGATCAAGTCTTTAGAGGGCATGTTTTGCTGGCACATGGTAAAGTGAAAAGGTTTTGCAATCACATCCTGATGACAACAAGGTCCAGGCAGAGTTTAAGAAGACTGTCTTTTCAAGGCTCGTCTGACTTCACAGAACAATGGTTTGATGCCAAGGAGAGTGATACTACtggtgatgaagatgatgatataTCTGAACAAGAGGACACGAATGAGTCACTACAGATTCAGAGCTATCAATTCTCACCAGAGACTACTGAGTACAAATCAGTGGTTTCAAGACTTGTTGACTATCGGCAGAAGCAGAAAAAGTTCAACAGTGgCAACTGTTCATCTTGTAATGTTCCTTTTAAGTCCATTCTAAAGAAACGGCAATACTGCCGTCACTGCGGAGAGGGCTTCTGCTCACGTTGCTGTTCTCATCGTGTGAAGAGGGCAGTGTTTGGTGCTACAGCGCCTGCTGCATACGCCGAGACTGTCTTGGTTTGTAAGCCCTGCTACGACTACCTCATGGGCCCGTACTCCGAAGACAAACCTGAGGAAGTTGATTCAGGGTAACCTGCTAACTGAAGACTATACAAGTAACCAGTTCAGCGGCTTTACTCTTCTGTTTAGCAAGTTTTTGTGGGGGTGGTCAGAGGAAATAGAAAATGTAGTATGGACCGCACGAAGAATCGGGACGAGAGGTCATGCCCTACGCTTGCTCTCTATTTCCTTTGAACAACTTACAGGGCGCTTTCTATGTAGATAAGGCTGGTGTCCACATGGGGGCCATCGATACCTTGACGATCGCATACCGATTGCAAAGTGGTTTCCACGTGATCCACACGATCACAAGATGAGTTTCCATACTGTATACCGCAATACTGAATACTTCCATACTGTTTACTGCAACAGTTTACTGCCATACTGTTTTCTGTCATACTGTATACTGCTATATTTACCACATGTTCCACATTATGGCACAACCTCAATATGAtcttgataatgataatgattatgatgatacgTTTTTCCAGAGGGAACATCTAAGTGGTGATATACTCATTAGAAagctaataaaaatatttaaatgtaAAAATTTACAAAAGCAAATTCGTTTTGGAAAAGCCATGTCGCCATTACCAAGTCTAGAGAAGAATAAAGCGCACAAAAGGCGTGGCAACAGTCCAAAgaaatgaaatataaataaagcAGAGTGAGTTTGAAATTCCGAGATGGACCTGTTTCCAGAATCCTCGTAGAAACTTCGTTCCATGGACGAGACTAGGGAGCTTTCGGCTGAGTGAAGGACCATTAGATACTTTAGGTTTGGGGGGCATTTTCATGGTTTTATGCTTGTTGATCTAATTGCTGGagttgttcttatttttgtagTCTGATTGTGGGGGAGTTGAAATACCTAgaatttctatatttttatatgttaAGGAAATGGGGGGTGTGGGATTCCACTCTAAAGGTtcactaaatgaaaatgacTCTATTCGCAGAAGCCCCATGGCTTTATTCTGACTCAACTTGTCTCAAGAGAGTATAATCATACCATTAAAACATAATATGGGTAAACTCtattaatgaaaaaaaaaacgcgcatAAATCTCCTTTTTATTTCCGTCTTTTTCTTCtgaataaaaagcaaaaacgtAAAGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06398	Pex24p	Integral peroxisomal membrane peroxin	Family	Interproscan
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042405	Family	Protrudin	Interproscan
IPR010482	Domain	Peroxin domain	Interproscan
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14543	PROTRUDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0043621	Molecular Function	obsolete protein self-association	Interproscan
GO:0071782	Cellular Component	endoplasmic reticulum tubular network	Interproscan
GO:0071787	Biological Process	endoplasmic reticulum tubular network formation	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19368	ZFYVE27; protrudin	-	Endocytosis	ko04144	deepkoala