Gene detail

Detailed information of XP_032231319.2 in Nematostella vectensis

Genomic Location: NC_064048.1:12256423...12268808
NR annotation: XP_032231319.2, glutamate receptor ionotropic, NMDA 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5506976

ATGGCGATTCCTGCCCGCCTCTTTTTGTTGTTGGCGTTTTCGACTTATAGCGTTGACTCTGCGAAAACATTCAATATTGGCGCTATGCTATCGTCTACAGATGCCATAGGGGCTTTTCAAGAAGCTATCGAGGCGGTGAATGTCAACAACGAGACATTTCCAGGAGTAAAGCTCAACGCCAGCTCGTTTATTCTGAGCCAGAATCCGATTCGGTCTGCGTTGGATGTGTGCGAGCAGCTTGTGGCGAAACAAGTGCATATTGTAATAGTTAGTCACCCAAATGGTACAACCGACCCACCGATCTCCGTTTCGTACGCATGCGGTTTTTATCGAATTCCTGTCATTGGGATTTCAGCCAGAGAATCTATATTTTCCGACAAGACTATCCACGAGTCGTTCCTGCGTACCATCCCCCCGTATTCTGACCAGGCAGACGTTTGGCTGCGTCTTCTCAAGTACTTTGAGTGGAATAAAGTGATTCTTCTGACCAGCAATGATCAGGACAGTCGCGCCATAATAACAAGGTTCTCCACGCTGGCCGAGAAGAGTGACATCAAGATTGAGAAGACGGTTATGTTCCCCAGTGGATCAGAAAATGTCACTTCTTATCTGCAACAGCTACAGAAGACACAGTCTCGAGTTATTCTGTTCAGTGCGAGTCCGCAGGATGCCAGTGTTGTGTATTACAACGCCACGTCACTCAAGATGACAGGAGAGGGCTATATTTGGATTGTGACACAGCAAGCACTGTCAGGGGTGGCCAGGGAGAATTTGCCGCAAGGGGTAATCGGCATCGAGCTTCTACACGGCAACAGCGAGATTTCCCAGCTGAAAGACGCTACAATCATCTCGGCCACTGCCTTGCAAAACCTAGCTAATGCGGGCAAAACCCTGACCACTCCGACCGCAAGCTGCAGAGAGACACAACAATGGTCGAGCGGCCAGGAACTCTTCAACGCTCTCGTGAACGTGTCACTTCCACGTGGCACGACTGGACCTATCGCCTTCAACAGCGACGGAGACCGGAAAAGCGCAGTCTACAGGCTAATAAATCGGAGACAAAGCTCTAGCGACGCGCTCGATGTGGTTGGCTTATATGAGAATGGACATGTTTCAATTAACGAGAGCATTATATGGCCTGGAAACCTCAACACCACCCCCACGGGGGTTTTCCTGTCCAACCATCTGCGGGTGGTGACGCTGGTCGGAGAGCCGTTTGTGTACGTGAAGCCGATCCCCACAAGCGGTCGGTGCAGCGATCTTGACACGAATACGGCAAAGCATGTGCTCTGCACGGGGACTGTCTCCGATACTGACTCGGGTAGCGTGGAGGCCTCACCTGACCGACACTGTTGCTATGGGTTCTGCATGGACCTTCTGATCAGGCTCGGAGAAAAGGTCAACTTCACATACAGCGTCAGCCTGTCTGAGGACGGCAGCTACGGGTCACTCAGAAGGGTCAACGGGTCCGACACTAAGCAGTGGAATGGCATGGTCGGCGAGGTGATCCAGGGAAAAGCCGACCTCATCGTCGCCGCTCTGACCATCAACAACGAGCGCGCAGAATGGATCGAATTTTCCAAACCTTTCAAGTACCAGGGTCTCACTATTTTAGTCAAAAAGAACGAACAGAGCAACAGCCTGGACTCCTTCCTGCGTCCGTTCCAGATCCACCTGTGGCTCCTCGTGCTCCTCTCCGTGCATATCGTCGCCGTCATCCTGTACCTGCTAGACCGGTTTAGCCCGTTTGGTCGGTTCAAGCTTGCGAGAAAAGAAAAAGAGGAGACTGCACTCAACTTGTCTAGCGCGATGTGGTTTAGTTGGGGCGTTTTGTTGAATAGTGGAATCGGAGAAGGCACCCCGCGGAGCTTCAGTGCGCGCGTGCTTGGGATGGTCTGGGCCGGCTTTGCTATGATAATCGTTGCAAGCTACACCGCGAACCTCGCCGCCTTCCTCGTCCTCGATCGACCTAAAGCTGTGGTCAGCGGTATCGACGATCCAAATTTGCGGAACCCATCCAAGCAGTTCATCTACGCGACGGTGGCCAACAGTAGCGTGGATGCGTACTTCAGGCGGCAAGTAGAGCTCTCTTCCATGTATACATTCATGGAGGGGTACAATGTCAAGACGGCAAAGGAAGGCATCGAGAAGGTCAAAAACGGCGAATTGAAGGCGTTTATCTGGGACTCCCCGGTACTTTACTATGAAGCATCTAAGGACTGCACACTGACTACTGCTGGAGAGCTTTTTGGCCGTTCTGGGTACGGCATCGGCATGCCAAAGGGTTCACCATGGAGTAACGCAATCTCTCTCGCAATCCTCAACTTCCACGAGAGCGGAGTGATGGAAGAGCTCGAAACGACTTGGATAGACGCGTCTAAATGCAACACGGAGAACACTTCACCGGCCACACTAGGGCTACAACACATGTTGGGTGTATTCATTATGGTTGCGGCAGGTATCGGAGCCGGTATCGTGATTATCATCCTTGAGATTCTTTATCATAAACACCGCGGCTGGAAAGAGGAGCAGAAGGAACTCGCTAAGAAAACAACCGACAAATGGCGCGCGAATATCCTCATGATGAAGAAAGACCGCTCCAACCACCAGCCGAACGGCATGATGGGAGATGGTCGTAACGGCGATGGTAACGGCATAGCGCGACGTAACCCCATATACAACCCAGAAAACAACCTGGAGAGCGCGTTTACTTACAGTTAA

Transcript

rna-XM_032375428.2

AGTAGCGTGCTGGTCGTAAGAGACCACTAGTAATAAAAACAGAGTGCTGATGGCGGCGAATCGGATCGTACCTTCCTTTCAACCACTGACATGTAAAAACTGTGCCATCCCCAGCATTACTTCAAAAGACAGAGACTTTTGAATAACGAACAATCGGATATCGACAAGCTTCGAACGTTCAATCATACGGAACGATTTGTGAAATCGATCCTTTGTGTATTGGTTTTTCCCGCGTTATTCAATTTTCCGGCGGTTTTAGAGTCGGTTTCAAGTGTTGGAGTAGCTAGCATTTTGTGGGAAAATGGCGATTCCTGCCCGCCTCTTTTTGTTGTTGGCGTTTTCGACTTATAGCGTTGACTCTGCGAAAACATTCAATATTGGCGCTATGCTATCGTCTACAGATGCCATAGGGGCTTTTCAAGAAGCTATCGAGGCGGTGAATGTCAACAACGAGACATTTCCAGGAGTAAAGCTCAACGCCAGCTCGTTTATTCTGAGCCAGAATCCGATTCGGTCTGCGTTGGATGTGTGCGAGCAGCTTGTGGCGAAACAAGTGCATATTGTAATAGTTAGTCACCCAAATGGTACAACCGACCCACCGATCTCCGTTTCGTACGCATGCGGTTTTTATCGAATTCCTGTCATTGGGATTTCAGCCAGAGAATCTATATTTTCCGACAAGACTATCCACGAGTCGTTCCTGCGTACCATCCCCCCGTATTCTGACCAGGCAGACGTTTGGCTGCGTCTTCTCAAGTACTTTGAGTGGAATAAAGTGATTCTTCTGACCAGCAATGATCAGGACAGTCGCGCCATAATAACAAGGTTCTCCACGCTGGCCGAGAAGAGTGACATCAAGATTGAGAAGACGGTTATGTTCCCCAGTGGATCAGAAAATGTCACTTCTTATCTGCAACAGCTACAGAAGACACAGTCTCGAGTTATTCTGTTCAGTGCGAGTCCGCAGGATGCCAGTGTTGTGTATTACAACGCCACGTCACTCAAGATGACAGGAGAGGGCTATATTTGGATTGTGACACAGCAAGCACTGTCAGGGGTGGCCAGGGAGAATTTGCCGCAAGGGGTAATCGGCATCGAGCTTCTACACGGCAACAGCGAGATTTCCCAGCTGAAAGACGCTACAATCATCTCGGCCACTGCCTTGCAAAACCTAGCTAATGCGGGCAAAACCCTGACCACTCCGACCGCAAGCTGCAGAGAGACACAACAATGGTCGAGCGGCCAGGAACTCTTCAAcgCTCTCGTGAACGTGTCACTTCCACGTGGCACGACTGGACCTATCGCCTTCAACAGCGACGGAGACCGGAAAAGCGCAGTCTACAGGCTAATAAATCGGAGACAAAGCTCTAGCGACGCGCTCGATGTGGTTGGCTTATATGAGAATGGACATGTTTCAATTAACGAGAGCATTATATGGCCTGGAAACCTCAACACCACCCCCACGGGGGTTTTCCTGTCCAACCATCTGCGGGTGGTGACGCTGGTCGGAGAGCCGTTTGTGTACGTGAAGCCGATCCCCACAAGCGGTCGGTGCAGCGATCTTGACACGAATACGGCAAAGCATGTGCTCTGCACGGGGACTGTCTCCGATACTGACTCGGGTAGCGTGGAGGCCTCACCTGACCGACACTGTTGCTATGGGTTCTGCATGGACCTTCTGATCAGGCTCGGAGAAAAGGTCAACTTCACATACAGCGTCAGCCTGTCTGAGGACGGCAGCTACGGGTCACTCAGAAGGGTCAACGGGTCCGACACTAAGCAGTGGAATGGCATGGTCGGCGAGGTGATCCAGGGAAAAGCCGACCTCATCGTCGCCGCTCTGACCATCAACAACGAGCGCGCAGAATGGATCGAATTttccaaacctttcaagtacCAGGGTCTCACTATTTTAGTCAAAAAGAACGAACAGAGCAACAGCCTGGACTCCTTCCTGCGTCCGTTCCAGATCCACCTGTGGCTCCTCGTGCTCCTCTCCGTGCATATCGTCGCCGTCATCCTGTACCTGCTAGACCGGTTTAGCCCGTTTGGTCGGTTCAAGCTtgcgagaaaagaaaaagaggagACTGCACTCAACTTGTCTAGCGCGATGTGGTTTAGTTGGGGCGTTTTGTTGAATAGTGGAATCGGAGAAGGCACCCCGCGGAGCTTCAGTGCGCGCGTGCTTGGGATGGTCTGGGCCGGCTTTGCTATGATAATCGTTGCAAGCTACACCGCGAACCTCGCCGCCTTCCTCGTCCTCGATCGACCTAAAGCTGTGGTCAGCGGTATCGACGATCCAAATTTGCGGAACCCATCCAAGCAGTTCATCTACGCGACGGTGGCCAACAGTAGCGTGGATGCGTACTTCAGGCGGCAAGTAGAGCTCTCTTCCATGTATACATTCATGGAGGGGTACAATGTCAAGACGGCAAAGGAAGGCATCGAGAAGGTCAAAAACGGCGAATTGAAGGCGTTTATCTGGGACTCCCCGGTACTTTACTATGAAGCATCTAAGGACTGCACACTGACTACTGCTGGAGAGCTTTTTGGCCGTTCTGGGTACGGCATCGGCATGCCAAAGGGTTCACCATGGAGTAACGCAATCTCTCTCGCAATCCTCAACTTCCACGAGAGCGGAGTGATGGAAGAGCTCGAAACGACTTGGATAGACGCGTCTAAATGCAACACGGAGAACACTTCACCGGCCACACTAGGGCTACAACACATGTTGGGTGTATTCATTATGGTTGCGGCAGGTATCGGAGCCGGTATCGTGATTATCATCCTTGAGATTCTTTATCATAAACACCGCGGCTGGAAAGAGGAGCAGAAGGAACTCGCTAAGAAAACAACCGACAAATGGCGCGCGAATATCCTCATGATGAAGAAAGACCGCTCCAACCACCAGCCGAACGGCATGATGGGAGATGGTCGTAACGGCGATGGTAACGGCATAGCGCGACGTAACCCCATATACAACCCAGAAAACAACCTGGAGAGCGCGTTTACTTACAGTTAAAGGGTCACTTAACTGTGACCCCCACACAAGGTGAAGGATGGCATAAAGACATATAGTGGAAATGATAAGAGGATGCCTCTAACAATTATAGCCACGTTTTAAAATAGTGTACATTACAGCTAGTGGTCACTTTTACCAGGTTAATAATGCCTTTCAGTTTATATAGAGAGAGGGTTTGATAAAGATGCCTCTAATAATTATAGCCACGTTACAGCTTGAGGTCACTTTAGCAAGGTAATAATGCCTTTTTTATAGGCATAAACTTAAGAGTTTATATAGAGAGAAGGTTTGGAGGGGAATCCTCTGACCATTATAGCCACGTTTTAGAGGGTGTATATTGCAGCTAGTAGTCACTTAAGCCCTGTTAATAATGCCTTAACTATTATAGCCTTGTTCTAGAGGGCGTCATTATGGCTTGAGGTCACTATAGCCAGGTTAATAATAGAATTATATAAAAGAGAGGATTTGGAAGGGATCCCTCTAACAATAATAGCCACGTTCTAGAGGGTGTACATATTACAGATAGTGGTCACTTTTACCAGGTTAATAATGTCTTACCAGGTTAATAATGCCTTTAAGTTTATATACTGTGTGCACAGCGGTCATGTTATAGAGATTATGGTTCAAAAGCATCTAATCATTATGGGCACGTTCTAGAGAATGTAGATGATTGAAAGGGGTCACTTTAGCCAGGTCTAGATTCCATCTGCCCTTATATATTGTCTTTATAATGTTCATGTCATAGAGGGTATGGTTTGCATGTTGAGGAAGCCTTACGCATATTGTCTGTGTTATAGAGGGGATGTATAATATAAATAGTGGATTAGTATCTTACATTTACCGCATCGGGTTCGTGTTACAGAGGGTGTTTTATTGATCTGCTGATTCAGCTATACTTGGCCGGTCATGAGAGTATAGTCGTTATGTGCTATAGGGAATTTAGATTTACCTGCCATAGAAATAAATCAGAAAATCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35439	Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus OX=10116 GN=Grin1 PE=1 SV=1
Q05586	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1
P35438	Glutamate receptor ionotropic, NMDA 1 OS=Mus musculus OX=10090 GN=Grin1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00497 all species →	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF10562 all species →	CaM_bdg_C0	Calmodulin-binding domain C0 of NMDA receptor NR1 subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001638 all species →	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR049872 all species →	Domain	Glutamate [NMDA] receptor subunit 1-like, ligand-binding domain	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR049873 all species →	Domain	Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domain	Interproscan
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR018882 all species →	Domain	Calmodulin-binding domain C0, NMDA receptor, NR1 subunit	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05208	GRIN1; glutamate receptor ionotropic, NMDA 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.