Gene detail

Detailed information of XP_032231491.1 in Nematostella vectensis

Genomic Location: NC_064040.1:11188307...11201931
NR annotation: XP_032231491.1, gephyrin isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032375600.2

TCGCCCCAGTCCCTACTGTCGTGGGTCCTAAAATGGCGGACGGCGGAGGCATTCGTGTTGGGGTGCTAACCGTGAGCGATCGCTGTTCTAGAGGCAAAGCGGAGGACAGAAGCGGGCCTAATCTAACACGATTAGTTCTAGAGGAACCGCGTTTAAGCATCAAGGAAGTTGCGCACGAATGTGTCCCCGATGATATCGAGGAAATAAAGAAAGTCCTTCTCCGATGGAGTGACGAAGATCACTTGAATCTCATACTGACGACAGGAGGCACTGGTTTCTCACCAAGAGATGTTACCCCTGAGGCAACAAGTCAGGTTATTGATCGCCTGGCACCTGGACTGGCCCACAGGATGATGGAGGAGTCACTCAAAGTGACACCCCTTGCAATGTTGTCAAGACCTGTTTGCGGAACTAGAAAAAGAACACTAATAATCAATTTCCCAGGCAGTGTCAAAGGATCGCAGgAATGTTTTCATTTCATAAGCCGTGCATTGCCTCATGCAATAGAGCTGCTCATGGATTCTCCTAAAGTCAGTGATACCCACAAGGCCATGGGAGCTCACCATCAACAACTTCAACAAGACAACCATGACTGCTCACGTCGTTTCAATAAAGACCTTACACGCATAGCAGAGCGGGATAGACACTCGCCATTTCCTATGGTCCCGATGGACGAAGCTATCAACATCGTCATGAAGCAAACAGAACATCTAGGCACTGACACCGTTAACGTAGAAGACGGCATGGGATACATTTTAGCCAATGATGTACTCGCAGACTCTCCCTTCCCACCATTTCCTGCGTCAATCAAGGATGGATACGCCGTCGTTGCGTCGGATGGCCCTGGAGTCCGGAAGGTTCTTGGTCCAGTTACAGCTGGTGTCGTGACTTCGTCAATCGTCACGTCTGGTCACGTGATGCGAATTACGACTGGGGCCCCAGTGCCTTCTGGGGCGGATTCGGTTGTTCAAGTGGAGGACACAGAGCTCGTGGAAAGCGCAGACGAGGGTCAAACAGAAGTTCAGGTTAACATTTTATCGACACCCAATCCAGATCAAGATATCAGggcgATCGGCTTTGATATTGCTGCTGGCGAACTAGTGCTAAGTAAAGGTAGTCCGTTAGGACCCCCTGAGCTTGGTCTCCTAGCAACCGTTGGCGTCACCAAGGTTCCTGTATATAGAAAACCGAGAGTGGCAATTATGTCGACTGGAAACGAGCTCGTTGGCTCTGGTGAAATCCCACAGGCAGGACAAATCAGGGACAGCAACAAAATCATGCTTTCTGCTGCTGTTACTAGGGAAGGATTCGAGGTCCTGGACTTGGGAATTGCTTTAGACAGCCCTGATGACCTTCAGGCGAAACTAAAAAGAGGCGTGTCTGAAGCTGACGTCATCATCTCCTCTGGGGGCGTGTCCATGGGAGAGAAGGATCTTTTGAAACCGGTACTAGAGAAAGGACTTGGTGCCACGGTTCATTTTGGCCGAGTGTTTATGAAACCTGGAAAGCCCACGACCTTTGCCAGCCTGCGTACGGGGTCGCAGAAAAAGTTGCTATTCGCCCTTCCTGGCAACCCGGTTTCGGCGATGGTGACTTTCTACCTTTTCGTGCTTCCTGCCCTTAGGAAGCTGGCTGGACACCAGTTCCCTCATTTGACCAAAATCAAAGCTAAGCTGGCCAAGTCAGTGAGGTTAGACCCCCGTCCAGAATACCACAGAGCAGTATTGTCATGGCAACCAGATGATCCAATCCCAGTGGCGCAGTCAACGGGCAGTCAGTGCAGCAGTCGCCTTCTGAGCATGCGCACTGCGAACGCGCTGTTAGTTTTGCCGCCACGATCTGACGAGCTGATCGAGATCGGTAGCGGCTCAATTGTTGACGCTCTCATTCTTGGTCCAGTGTAGCAGAGAAACAGGAAGATATACATAGCTCTCGGCACCAGTCCCTCTTCAATCACAATCCGCAAGGTATTCTGGGTAGATTAGCAATACACAGTAGTACAGTAATACGAGGACGACGATGGAAGACTCTAGGGCCGACTTGgtactgtttttttattacccAAAGACTATGTAATGCTTTAACAATAGAACAGCGCCGTTgaattgtgtagttccagaaaatgtccatacccccctccccctattgAGGGGGCCGAAGGTATGACttcccacccctctggaatttccaaccccctggaaataaatacagtaactgttaaggaaaaagggcattttaacccccccccccctcccctctggaaattcctgggcgtttgaaacccccaccccactggaatttccaatcctctcaatgggggggggggagggtatggatattttctgaaaCTACACATTCCACAGTGATATACTTATGTATACATCTCAATTGCACTGGACACATACATCTCACTTGCGCCTCATTGCGGCACTAGAAGGGTCCCATTACAAGACTGAGAAGTCGCTTAACTTTTCGAGTGGCAAATTAAAGCCAAAATCAAAAAGAAATTGATCGACAAAAAATatctttcaatgaaaatataaagccCTTTCTGACAAAAAAGCTTCTCGGCTGATCTGTTAGCGCTGAATAAGTAGCTCTATCATTTGTCACCCaagaagtcacgtgatctggtAGTGCAAGTAGGCCTATTCGGCCACACTTTAAGTTGTTATCAAAAAATAAAGCAGAGCAAAAGCTAATCCGCTATGATGGCGTCAATCATAGTTTAAATTGAGATTTTATCCGAAAAAATATTCTTCTAAGGTGTTTATGGGAAGGCTGTGTGctgataatttatttttgtaggaAGAGACTGGGATTGAGTAGGCATATTAAAAAACAGAATGCTGATTTTTAATTACAACAATTTTCCATTTTGGGGCAGGTTTTACCCAtgtgtttttaatattatattttcctattttctcAATTTTCGTAAAACATCGTAAAATTTGATTTGACAATTTCTGGAAGTAAATTACTTGTAAAATACACtagtataaaaatatatgtatttCTTGCGAGCCTTTTGCTCTGAAATCAAATACTGTTGTTTTGTCACTTTGAATGCTTATACTTTTTTCACGTCGAATCCATTTTGATGGTTCCAATACagaaaagtttaaaaattATGAACTCAAATTGTCTTAAATTTTTACGATAATTTCTGTCTTATTGTAGCTCTACCCTTCCAATTGAGTCACTCATGTTGTATTCAAAACGCTGAAAAAATAAAGCCCTGTTTTCGAAAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NQX3	Gephyrin OS=Homo sapiens OX=9606 GN=GPHN PE=1 SV=1
Q8BUV3	Gephyrin OS=Mus musculus OX=10090 GN=Gphn PE=1 SV=2
Q03555	Gephyrin OS=Rattus norvegicus OX=10116 GN=Gphn PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00994 all species →	MoCF_biosynth	Probable molybdopterin binding domain	Domain	Interproscan
PF03453 all species →	MoeA_N	MoeA N-terminal region (domain I and II)	Family	Interproscan
PF03454 all species →	MoeA_C	MoeA C-terminal region (domain IV)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036425 all species →	Homologous_superfamily	MoaB/Mog-like domain superfamily	Interproscan
IPR038987 all species →	Family	Molybdopterin biosynthesis protein MoeA-like	Interproscan
IPR008284 all species →	Conserved_site	Molybdenum cofactor biosynthesis, conserved site	Interproscan
IPR001453 all species →	Domain	MoaB/Mog domain	Interproscan
IPR036135 all species →	Homologous_superfamily	MoeA, N-terminal and linker domain superfamily	Interproscan
IPR036688 all species →	Homologous_superfamily	MoeA, C-terminal, domain IV superfamily	Interproscan
IPR005110 all species →	Domain	MoeA, N-terminal and linker domain	Interproscan
IPR005111 all species →	Domain	MoeA, C-terminal, domain IV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10192 all species →	MOLYBDOPTERIN BIOSYNTHESIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan
GO:0018315 all species →	Biological Process	molybdenum incorporation into molybdenum-molybdopterin complex	Interproscan
GO:0061599 all species →	Molecular Function	molybdopterin molybdotransferase activity	Interproscan
GO:0032324 all species →	Biological Process	molybdopterin cofactor biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15376	GPHN; gephyrin	EC:2.10.1.1 EC:2.7.7.75	GABAergic synapse	ko04727	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.