Gene detail

Detailed information of XP_032232273.1 in Nematostella vectensis

Genomic Location: NC_064034.1:19470833...19478465
NR annotation: XP_032232273.1, BRISC and BRCA1-A complex member 1 isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032376382.2

GACATTCCGACCGGTCTCGCAATGACTTCGGAGGTAATTCGATAGAATATTACCGCTGGTTTGATATACGCGGGCtgatcaaaatggcggacagataaatttgttgttgtttttctgttttaaCGCAAAGATGTCTAAACAATTGCCAGAAACTGATCTGATAGACCTCAGTGATGACAAGGACGCAGACAGTCAGAGAAGTTCCCCTGTCATTCTTACCAAGCACCCAAATAAACACAATACGGGAAAGGGAAGAAAGGGAGAGGAAAAGATCCTGTGTCTAGATCTATCAAATGAGATGAATGAGAAGTCATTTCCAAGCAAAAAAGCCCCAGATTTTACTGCTTACCAGTTTGTTAGAAAAGCTGCAAAGATATTTGTGAACAACAAGGCCATGCTGAACTCCATACATGAATTTGGTGTGATCACGCTTGCAGACGATGCCACATGGtACCAGCAATTTGAAAGTAACCCTGACATGATTTGCACCTTACTTGATCACCTTAATCCCAGTGAGGAAGATAACCAAGACACTTTTGATATGGAAAAACTTTTTCAGACAATATGTCAGCGTATCGCATTGCCGGAGGTTGAAGACCCTGCCCTCCCCCCACCTTACGTTATCAGGGTGATTATGATTTATGGACGGTCCCACTGTCCACCTCATTTCACCGACAGGAGCCGACAAATGCTCCGTGAGTTGTTGCAATCaccatatttcttttttgatgTTCTGTATGTCCACGAATTGCCCTCTGAAAATAACCAATGCGAGGCGATTTATGACAGCTTTTGCGAGCTGGACGAGGATGAAGATGGTTATATGTTGGAAGTTTCTCGGAGCACATCCCGCCTGTTCGACCACATGGCCATTCTACTAGCTCATCCACTCCAGAGACCAAAACAGAGGGACACTTTCTACGAACTGCAAAATAGGGATGATAATGAGACTACGTGAAGACTAAAACAGAAAGACACTTGCTACGAACTGCAAAATAGGGATGATAATGAGATTACGTGAAGACTAAAACTCAGGGACACATTCTATGAACTGCAAGCTAGGAATgaggagttttttttttttctaaaaaattaGATTTATGACAGCTTTTGCGAGCTGGACGAGGATGAAGATGGTTATATGTTGGAAGTGTCTCGGAGCACACGCCGCCTGTTCGACCACATGGCCATTCTACTAGCTCATCCACTCCAGAGACCAAAACAGAGGGACACTTTCTACGAACTGCAAAATAGGGATGATAATGAGACTACATGAAGACTAAAACAGAGAGACACATTCTACGAACTGCAAGTTAGGGATGAAAATGAGATTACGTGAAGACTAAAACTCAGGGACACATTCTATGAACTGCAAGCTAGGAAtaacgagtttttttttttctgaaaaattAGAATCCCGGAAAAGCAAATGATTCAGGTTATCAGGGACAACATTACACGTAATCTGaatttgaaaaacaaattatacCTAATACTCCCTGCATATCCCCGGTATACGGGGTGTTTGCAGACGTTCTCTCGCTCGAAtttttcttattaagaaaAGTGTAAATAGGAATAGACTAGAGCTTATGTACACCggcagaggggaggggaatgcCTCCATTATATTTCAGCCTTACCCCCAACAATGCCCTTGCCATGTAAAAGCTCtccgtacccccccccccaccaccaccaccaccaccaccatcacgaTATTGTTTCCTTGTCAATgttcctccccccctccccacgaTATTGTTCTCTTGTCAGAgttcctccccccctccccacgaTATTGTTCTCTTGTCAGAgttcctccccccctccccacgaTATTGTTCTCTTGTCAGAgttcctcccccctccccacgaTATTGTTCTCTTGTCAGAgttcctccccccctcccacgATATTGTTCTCTTGTCAGAgttcctccccccctccccacgaTATTGTTCTCTTGTCAGAGttcctccccccttccccacgATATTGTTCTCTTGTCAGAgttcctcccccccctccccacgaTATTGTTCTCTTGTCAGTGTTctctcccccttccccccacaaTATGGTTTCCATGTCAGAATTCCTTATACTCCCCGTTAGACGGTATTAGCTGGTTTATCTTATCTCTGAGGACGCGGTAACTGCCCCATATTTTCCGTGTCTAGTGCGGGCTTCCTACGACATCTGTCAGATGGTGGATCAACAGATCATATCGTCATGTCTCATTACGTGATGTATAACACCGGTAACATCCATGACTTGAGTTCCGCTGAGATTACCAAAGCAAAGTTCATATCCAAGGCGCTTTAGACCTTGTAATCGCTAATCAAACGCTCTTTCAGTCGGGACTTGTCATAGAAAACCCTGCTGACAAGCGCGTCACGATTAAAGACAAATCGTCGCGCAAATCGTTTTTGCACCGGCCGGATCGTTCTGAGATTGATCTCGTCATATTCTAGGAAATGAGAAGTTCTTTCTTTAGCTTTTGAATGTTATATTTCAGCCATTGGATACTCTCTCAATAAACGCTTAATTATG

Protein

Uniprot

Uniprot term	Description
Q6AXK4	BRISC and BRCA1-A complex member 1 OS=Danio rerio OX=7955 GN=babam1 PE=1 SV=2
Q08E57	BRISC and BRCA1-A complex member 1 OS=Bos taurus OX=9913 GN=BABAM1 PE=2 SV=1
Q5R7L2	BRISC and BRCA1-A complex member 1 OS=Pongo abelii OX=9601 GN=BABAM1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR026126	Family	BRISC and BRCA1-A complex member 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15660	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0007095	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0045739	Biological Process	positive regulation of DNA repair	Interproscan
GO:0070531	Cellular Component	BRCA1-A complex	Interproscan
GO:0070552	Cellular Component	BRISC complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20776	BABAM, NBA1, MERIT40; BRISC and BRCA1-A complex member 1	-	DNA repair and recombination proteins	ko03400	deepkoala