Gene detail

Detailed information of XP_032232490.2 in Nematostella vectensis

Genomic Location: NC_064040.1:14074968...14080616
NR annotation: XP_032232490.2, E3 ubiquitin-protein ligase TRIM71 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5507863

ATGGACATACAGAGCATCTTAGAGAACTTAGAGGAGCTTTTAACATGTCGACAATGCTCGAATGTATTCAAGAACCCGCGAATCACGCCTTGTTTGCATTCTTTTTGTGCGGAATGCCTGAACGAGATCGCTCGAAGCCGGCCATATCAAGCCTACATTGCTTGTCCAACGTGCAAGTATGAGATTAGGAAGCCAGAGGGTGGATTGTTTAATACGCTACCTCCTAATTTCTTTCTCAATCGACTGCATGACATCTATGTAGCAAAGCGAAGATCCTATAGCGATTCCAACTGTGGTAATTGCCACCGTAAAGTGCTTCTCAATTCGTTTTGTTTTGCGTGTGATACTTTCATGTGTGAGGAGTGCTTAACGGCACACAATGTCATTACACGCAGTAGTGGCCACAGAAGCATTCAATTGGGAAGATTCAAGCAGAAGGAATATGATGATTTATTAAGACGAGCCGTGTTTTGTGCGCACAAGTTTAATGACCGTGGAGTTGTGGAGTATTTTTGCTATGATTGTGATGCGTGTGTTTGTCACATTTGCAATGTCGCCATACAGCACAAGCATAAAATCATCGACATCCACGACGCGGCAAACGACCATAAGATGAAGATTATTGACGGAAACATCAAGTTAAAAAGCAAGCTTAAAACCGTGGAAACGGGGATAAGTAATGTGGAATTTAAGAAAATGGAAGTTAATGAGCAGATTGATTATGTCAAGAGTGATATCAAGTCTAGAATTGAGAGCTTGGTTCGCACATTGAAGAAACATGAAGAGGAGATGATAAACGAACTTGAAAAAATCCGTAAAGACAAGCAAGAGAATTTATCATTTCAACTTCAGATGTATGAGACGATGCACAGACAGACGATGGGCGCAGTCGTATTCACTGAGGACCTACTGCAGAGAAACATGAGCGAGGAAATCCTGTCAATCAAAAATCACATGTTTGAACGAGTCAATGAGATCCTGGACACTAATGTAGGGGTCACACCTGCTGAAAATGAGAGAGTGGGGTATGTCGCTAATTCTGAAGCCTATAATGGTATCCTATCTGTTTGTCTTGGGCACATTAGCACAAGTCTGACTGAGCCCATTGAGTCAACAGCTGAAGGGGAGGGGCTTTCTGATGTGTCAGCCGGTGAGGAGGTGTATTTTACTGTCACGACTAGGAATGCACAGGGTGATGTCTACTACAGCGAGATTGATCATGTGGTTGTGGGTGTAGACTCGATGATGTGGGGCGATGTGGAAGCATCTGTGAAAAGCCTTCACAATGGTCACTATGAAGTGAAGTATATTGCAAGAGTTCCTGGAATATATAAGATACAGGTAGAAATTGGTGGTCAACATATTAAGGATAGTCCTTTCAATGTCGAGGTCAAGCAGCCCGTGCTTACCCCTGTCAAGTCATTTGGTTCTCATGGTATGACAAAAGGGAAATTCCTTCAGCCTCATGGTGTCGCAGTCAGTACCATCGGCCAGATCGTGGTATCTGACAGCTTAAAGCACCACTTGCAAGTCTTCACTCCAGATGGAAATCTCATGTTTGACTTTGGAGGAGAAGGCTCAGACGATGGGAAGTTTATGCATCCTATGGCTATAGCATTTGACAAGTCTGAAAAGTGTCTGTATGTTGCTGATAGTGACAATAACAGGATTCAAGTTGTTGATGTCAAGAATGGAAGGTTCATACGGAAGTTTGGTTGTGTTGGTGAGGGCCCCGGCCAGTTTAATGGACCATGTGGAGTGTCTGTCGATGGCAAAGGTAGAGTCATAGTGACTGACTGGAACAACAACAGAGTACAAGTGTTCTCCAGTGAAGGCAAATTCCTGATGAAGCTTGGAGACACCGGTGAAGAGAGAATCATCCAACCAAGATGTGCCCTGTACCATGACGACAAGGAAGCCTTCATTGTCTCTGACACTGGCAATAATGTTATAAAGGTCTTTGACAAGAATGGTAAATTTTCTCATGTCATCGGCAAGCCAGGCTCCAAGAGAGGAGAGCTGCATGGGCCACGGGGTCTTGCCATTGATAAATACCAGAATATCATAGTTTGTGATTTTGAGAATCATAGGTTACAGTTTTTCAAGTTTGATGGTACAGTACTGAGCTCTTTTGGCACTAATGGGAAGGGGATAGGGCAGTTTGCATTTCCACTAAGCATTTCAGTGGTTGGGGGAGAGAGAGTTATTGTGAGTGACTGGGGAAACAACAGAATTCAGATATTCAAATGTAGAAAGGAGACACAAGTGAATGGACTGCTGAATGGAAGGGAGATGTCAAGACTTTCTAATGGTAGGGAGATGTCCAGAGATCATTTCTAA

Transcript

rna-XM_032376599.2

CTGTCACACAACGATAAGGAGTCACGCGATGTTTATAAATTCTTTTAATGTGTAAAACCTTATCTTTCTTGATAAGAAAACTAAGGAAGattcttttttatcaaagaagCATTTTCAGTCTAAGAGGtagtattaaaattaaaaaaaaaataacctaaCTGACACTTTTCTGTTGCGTTCTTGAGTCTGAAGTGAAGTTTCTTGGACAGAGAAACAAGGTTCAAGTTGTTGCCAAACAAAAGCACAAAGTGTtgataacaaacaaacaacaaaataccGATAAAATTCTGTATTTATCGAGTTTTATTGGAATGTTAGTCTTAATGATCATTCCTTTGACAAAAAGACAAAGGGACCAAGATAATACCGGCTTACAAAACACAACCCACGtgtaaatatttgaaacaaaacCCAGCAAGAGGCACTCATTAATACTCCAGTAGCCTGCCGACGGGGTCATAGATTCGCGCGTCGTTGCATATTCTATTGAAAATTTTGGCTAGTGCCACGTATCGCTTGCAAAATGGACATACAGAGCATCTTAGAGAACTTAGAGGAGCTTTTAACATGTCGACAATGCTCGAATGTATTCAAGAACCCGCGAATCACGCCTTGTTTGCATTCTTTTTGTGCGGAATGCCTGAACGAGATCGCTCGAAGCCGGCCATATCAAGCCTACATTGCTTGTCCAACGTGCAAGTATGAGATTAGGAAGCCAGAGGGTGGATTGTTTAATACGCTACCTCCTAATTTCTTTCTCAATCGACTGCATGACATCTATGTAGCAAAGCGAAGATCCTATAGCGATTCCAACTGTGGTAATTGCCACCGTAAAGTGCTTCTCAATTCGTTTTGTTTTGCGTGTGATACTTTCATGTGTGAGGAGTGCTTAACGGCACACAATGTCATTACACGCAGTAGTGGCCACAGAAGCATTCAATTGGGAAGATTCAAGCAGAAGGAATATGATGATTTATTAAGACGAGCCGTGTTTTGTGCGCACAAGTTTAATGACCGTGGAGTTGTGGAGTATTTTTGCTATGATTGTGATGCGTGTGTTTGTCACATTTGCAATGTCGCCATACAGCACAAGCATAAAATCATCGACATCCACGACGCGGCAAACGACCATAAGATGAAGATTATTGACGGAAACATCAAGTTAAAAAGCAAGCTTAAAACCGTGGAAACGGGGATAAGTAATGTGGAATTTAAGAAAATGGAAGTTAATGAGCAGATTGATTATGTCAAGAGTGATATCAAGTCTAGAATTGAGAGCTTGGTTCGCACATTGAAGAAACATGAAGAGGAGATGATAAACGAACTTGAAAAAATCCGTAAAGACAAGCAAGAGAATTTATCATTTCAACTTCAGATGTATGAGACGATGCACAGACAGACGATGGGCGCAGTCGTATTCACTGAGGACCTACTGCAGAGAAACATGAGCGAGGAAatcctgtcaatcaaaaatCACATGTTTGAACGAGTCAATGAGATCCTGGACACTAATGTAGGGGTCACACCTGCTGAAAATGAGAGAGTGGGGTATGTCGCTAATTCTGAAGCCTATAATGGTATCCTATCTGTTTGTCTTGGGCACATTAGCACAAGTCTGACTGAGCCCATTGAGTCAACAGCTGAAGGGGAGGGGCTTTCTGATGTGTCAGCCGGTGAGGAGGTGTATTTTACTGTCACGACTAGGAATGCACAGGGTGATGTCTACTACAGCGAGATTGATCATGTGGTTGTGGGTGTAGACTCGATGATGTGGGGCGATGTGGAAGCATCTGTGAAAAGCCTTCACAATGGTCACTATGAAGTGAAGTATATTGCAAGAGTTCCTGGAATATATAAGATACAGGTAGAAATTGGTGGTCAACATATTAAGGATAGTCCTTTCAATGTCGAGGTCAAGCAGCCCGTGCTTACCCCTGTCAAGTCATTTGGTTCTCATGGTATGACAAAAGGGAAATTCCTTCAGCCTCATGGTGTCGCAGTCAGTACCATCGGCCAGATCGTGGTATCTGACAGCTTAAAGCACCACTTGCAAGTCTTCACTCCAGATGGAAATCTCATGTTTGACTTTGGAGGAGAAGGCTCAGACGATGGGAAGTTTATGCATCCTATGGCTATAGCATTTGACAAGTCTGAAAAGTGTCTGTATGTTGCTGATAGTGACAATAACAGGATTCAAGTTGTTGATGTCAAGAATGGAAGGTTCATACGGAAGTTTGGTTGTGTTGGTGAGGGCCCCGGCCAGTTTAATGGACCATGTGGAGTGTCTGTCGATGGCAAAGGTAGAGTCATAGTGACTGACTGGAACAACAACAGAGTACAAGTGTTCTCCAGTGAAGGCAAATTCCTGATGAAGCTTGGAGACACCGGTGAAGAGAGAATCATCCAACCAAGATGTGCCCTGTACCATGACGACAAGGAAGCCTTCATTGTCTCTGACACTGGCAATAATGTTATAAAGGTCTTTGACAAGAATGGTAAATTTTCTCATGTCATCGGCAAGCCAGGCTCCAAGAGAGGAGAGCTGCATGGGCCACGGGGTCTTGCCATTGATAAATACCAGAATATCATAGTTTGTGATTTTGAGAATCATAGGTTACAGTTTTTCAAGTTTGATGGTACAGTACTGAGCTCTTTTGGCACTAATGGGAAGGGGATAGGGCAGTTTGCATTTCCACTAAGCATTTCAGTGGTTGGGGGAGAGAGAGTTATTGTGAGTGACTGGGGAAACAACAGAATTCAGATATTCAAATGTAGAAAGGAGACACAAGTGAATGGACTGCTGAATGGAAGGGAGATGTCAAGACTTTCTAATGGTAGGGAGATGTCCAGAGATCATTTCTAATTGGAGGTCACCACTCCTATGACCCAATATACAgagggaaaggaaaggggggaTTTAGTTTAACAGAGAATAGAAAGCCTATCTCACAAACCAAGCATTTTCTTTCATGTTTCATGAATGCAAAAGCAATGAAAAATATCAATGTCCAAGTCATGTTCCCTCAAACTTCCTCTGACCACCCTGTTGGTGCAAGGCCTATATACACTACTTCACGAAATTATGCATCAGTCTACTATAGTCTGTCTATGTTTGTCTATCCTAAGTTTTTCAAGGAGCTGCAAGCTCACCCAGTGTCTTAttcaaattaaataaaattgaaGTATCAGCCCAGATCATAAAGGGAAGGCAACGTATTACCTAGCTTTTCTAGCTAATAATGAATTTGTATACCTCAATGATCACACATGCAGGGGCGTAGCAACAGGGGTGGCCCaggccccccccccttcttctAGCaccaaaaaatacagtaaatgtatgagacattatctgcagtacatgaaaaaaattcttgaaagggccttttcgGCCCCCGAAAAGGCCCTGGCTACGCTGCTGGTATGGGAGGTGGTCTTGGCTTGTTTACAATATATAGGGTACCAAAGTGTGTTGACCAAATGTTTTTtaggggcgtgtctagagacAAATGCTCGGTGGGGTCCAGAGTAGTAATTCACTGTTAACAGAAACTAAGTTCAAAGCATCATTTAGCTCTGGTAATAGGTTatcactagatccatctagaaattttctttccaaatacacacaaaatTGACCGTTTACTTAGCAAAAAACGAAAGGGTCAACTGGAGTTAAACTAACCTCGTCACATGAGCAGGGTGGGGTCTTGACCCCTTGTACCCTTCCTCAGGGCATGCACCAGTTTTTATTCTGTTTTAATTTGACTGCATGTAACTATAGCTTATATTTAGGTGTTATTTAATGTTAATAATCAAAGAGTTAAAACTCTTTAAAAATATCATAACAACCTCCAAGCACTATTGTTCTATTTTTATAGTTATTATTTATGACAGGGGTATGTAGTATGGCTGGTATAAAGGAGGGGGACCGGTGGCTGGCATGGGGGGAAAGGAAGCTCAGTTCCAAACCCAGAGGCTTAGAACATTAATTTCCAAGGCAAAAAATCTGGCAATGAAGCAATGCTCTATTCTTATTCTTACCCCTACAATTCTGAACAATGCATATCCCTGATATTTATATAAGCTTGGTGTTGTGTGTGAGATTGTCACCCATTAATGAATAATCATATATTAATTTAAGGACAAATCCGGCCTTTAtggaaatatcgaaaaaacaaacagtcaGAAAGTCTCCTATATCCCATAGTTAGGGTAATAAATACCAGGGGCATATTAGCTAGGATTTCTAAAATGAGATAATCCAAAGGGGTCCTTCAGATCACATTTTGAATGTCCCATACATTAACTTCTAAAAGGATGTGCTCTCAATGAATATAGAAGACCTGTACCCAGGGTTTTGAGGTTAGGTACTCTCCCATtcagcggaccattttctatTAGGTATCTTGCCCCAGCTCACAGTGGTACTAAAaggcactaagaaatcacatgattttttgagtggcaaattcatgccaaataaacaaagaaatggTTGCGGCTGTTTCTGACATTGATTTTTCTCAACAAGCTTTCTGGTTGATTGTTATgtgctgaataagttgctttttgtatctgttattttgccaaaaaaagggaaaaatcaTGTGATTTCTTGTAAGTTGCCTATTTCTTTCTATTGAGAGGAAGGGCTGTCCCCACACTGCTATGAGCGTGTAACAGATTTGTAAAGGAATTAGCTGATTAATAGTTATCCctgtaataataaatatttgcACTTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C040	Tripartite motif-containing protein 2 OS=Homo sapiens OX=9606 GN=TRIM2 PE=1 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004476 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08450 all species →	SGL	SMP-30/Gluconolactonase/LRE-like region	Repeat	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR013658 all species →	Domain	SMP-30/Gluconolactonase/LRE-like region	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR003649 all species →	Domain	B-box, C-terminal	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032232490.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.