Gene detail

Detailed information of XP_032232630.2 in Nematostella vectensis

Genomic Location: NC_064040.1:2852472...2865838
NR annotation: XP_032232630.2, protein-glucosylgalactosylhydroxylysine glucosidase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5508007

ATGGATCCTCGGATCCTCATCACCCTCTTCCTCCTCTACCAAGCCACCTCAGCCACGAGCCATCAGTCCCCTACGCGCTTTTACTCGGATGACCTCGCTCGCGAGGAAAGTACCACAACAATCCGTGATAGTCGCCCGGGTGACATAATGGCGTCCGTAGCGAATGGCTACTTAGGCACCATAGTTTACAGCGATACGGTCCATATTGCCGGTATATACAGTGGGAAAGCCTACCCGAAACCCTGGCCGGCCTATCCACTGCATTTCTACGAGCACACTCACAGGGCGCGCCTACCGTCTACTTGCGCGGTGAATTTCTCCTTGAGTGAGCGTGAGAATATCACAGGGAAAAGCTCGTACGCTTTAGACGTGTCGGAGGCTGTTTTCTATCGCTGGTTCAAGGCTGATGGGGGGACGTTTGATGTGGAGCAGAGGATCTATGCGCATCGGTCACGCAAGCATCTCCTTGTGGTTGAGATCTCGGTGAATAATAGTCTGCAGCGTGACGTCACGCTAACCTTGACAACTAACCGCGGGGGGATATCGAGAGATGTGGACCTGAATGAGACAGTGTTTAAGCCAGGCTTGAGGGTCGCTGTTGGTAAGGTCAAAGTATTGGAAGAGTCAAACGGTTACCGCGCGAATGTCGCGATGGTCTGGGACGAGATTCCTGCTAATTTGACCGTGAGGGCCTCGGGCGAGCAGCACTGGTACTTCATCACAGCAATTGTTACTAGCCTCGATAACACGCTTAGTCCTGAGAACGAGGCTCTGAATCAGTGGAAGGATGCATCATGGGCTAGAAAGGACCTTCTAGCTTCCCACAAAGACGCCTGGAAGACGCTGTGGAGCACAGGGCGCATAGACGTAGAGGGTGACCTCCAGCTCTCCCAGGCCATCTACAGCAGCATGTACAACATACTGAGCTCCACCCGGGCCGACTGGCCGTACGGGCTGAGTCCGGGGGGGTTACCGGGAGGTGAGGAGTACATGGGCCACACCTTCTGGGACCAGGACATCTGGATGTACCCGTCTCTTGTGCTGTTGCAGCCTGACCTCGCCCGGGCGTGCCTGCAGTACCGGTACCACAGGCTGCCCGCTGCGAGGCTTATTTCGCAGAAGTTTGGAATGAAAGGGGCAATGTTCCCGTGGGAGAGCTCCCTCAGTGGGGTCGAGACCTCGCCAGGGCTGGTGTATGGCGAGACACAGGTCCACATCACGGGGGACATCGCGTACGCCGCAAAGCTCTACTGGTGGGCTACTAAGGACCAGCAGTGGATGAGGGAGACTGGGTACCAACTTGCTACTCAGACCGCAGAGTACTGGGCCAGCAGGGCTAATTACCGTGACGCCGCTGACCAGTATGTGATCCAGTACGTCATGCCCCCCGACGAGTATCAGTTCCCTGTGGACAACTCGGTTTACACGAACGTCGTGGCCAAATTGAACCTGGAGTTCGCCATTCAGATATCAAAGATCTTGGGCAAATACTATCCAAGCAGATGGGAGTGGATCAGGGATAAGATGTACATTCCATTCGACACCGAGCGCCACTACCACCCGGAGTTTGACGGCTATCATCCGGGCATTAAGGTCAAGCAAGCAGATACCATCCTGATTGGGTACCCACTTATGTTCAACATGAGCAAACAGATTCGTCGAAATGACCTTGAGATGTACGAGAAGGTGACGGATCGTAATGGCCCGGCTATGACCCATTCCATGTTTGCGATTGGTTGGCTGGAGGTTGGCGACAAGAAAAGGGCAGCCAAGGCATTTGCTAGAAACTATGAAAATATTCAGGGACCCTTCAAGGTATGGACTGAGCAGAGCCACAGTCGCGGTGCCGTCAATTTCATCACGGGCGCCGGGGGGTTCCTCCAAGGCCTGCTCCACGGCTACGGGGGCGTGCGAGTACGCGAGGACAGTCTCGAGATCAATCCCACCCTACCCCCCTCAACCACCAGGCTCACCCTCACGGGTGTTCATTACCTTGGCAGCGTGATCGACATAGCCTTAGACGCATCACGTGTTAACGTGACGTTGACGTCTACGTCACAGATTGCGCCTAGTTTGGAAGTGGTGGTCAGCGGAGTGTCCAGAGTGCTGATGGAGGGACAGACAGTAAATATACCAAGCGGAAAGGCATTTGTGCGCATGCGCGCATAG

Transcript

rna-XM_032376739.2

AGGAAATTTGTTTACTGTTTTGCATTGGAAAACCATTGTTGTGCTTTCTAAACCATCCCCCTCCCTCACTACGCATTTACACAATTCTTCAACAACCTTAAAGTTGTGCATATTTCACAGCGTCTAAGAGAAAAGTCTGTTAATCCTTGTGAGTCCAATATTTTGTAACACGAGATGCCATcataacacacacacaccggGTCATCATCGACGCACAGTGAGCCCTTGTTAGCACCGCCACCGTCTGGCAGCAGAGCACAAGGCGGCTCCGCAATGGATCCTCGGATCCTCATCACCCTCTTCCTCCTCTACCAAGCCACCTCAGCCACGAGCCATCAGTCCCCTACGCGCTTTTACTCGGATGACCTCGCTCGCGAGGAAAGTACCACAACAATCCGTGATAGTCGCCCGGGTGACATAATGGCGTCCGTAGCGAATGGCTACTTAGGCACCATAGTTTACAGCGATACGGTCCATATTGCCGGTATATACAGTGGGAAAGCCTACCCGAAACCCTGGCCGGCCTATCCACTGCATTTCTACGAGCACACTCACAGGGCGCGCCTACCGTCTACTTGCGCGGTGAATTTCTCCTTGAGTGAGCGTGAGAATATCACAGGGAAAAGCTCGTACGCTTTAGACGTGTCGGAGGCTGTTTTCTATCGCTGGTTCAAGGCTGATGGGGGGACGTTTGATGTGGAGCAGAGGATCTATGCGCATCGGTCACGCAAGCATCTCCTTGTGGTTGAGATCTCGGTGAATAATAGTCTGCAGCGTGACGTCACGCTAACCTTGACAACTAACCGCGGGGGGATATCGAGAGATGTGGACCTGAATGAGACAGTGTTTAAGCCAGGCTTGAGGGTCGCTGTTGGTAAGGTCAAAGTATTGGAAGAGTCAAACGGTTACCGCGCGAATGTCGCGATGGTCTGGGACGAGATTCCTGCTAATTTGACCGTGAGGGCCTCGGGCGAGCAGCACTGGTACTTCATCACAGCAATTGTTACTAGCCTCGATAACACGCTTAGTCCTGAGAACGAGGCTCTGAATCAGTGGAAGGATGCATCATGGGCTAGAAAGGACCTTCTAGCTTCCCACAAAGACGCCTGGAAGACGCTGTGGAGCACAGGGCGCATAGACGTAGAGGGTGACCTCCAGCTCTCCCAGGCCATCTACAGCAGCATGTACAACATACTGAGCTCCACCCGGGCCGACTGGCCGTACGGGCTGAGTCCGGGGGGGTTACCGGGAGGTGAGGAGTACATGGGCCACACCTTCTGGGACCAGGACATCTGGATGTACCCGTCTCTTGTGCTGTTGCAGCCTGACCTCGCCCGGGCGTGCCTGCAGTACCGGTACCACAGGCTGCCCGCTGCGAGGCTTATTTCGCAGAAGTTTGGAATGAAAGGGGCAATGTTCCCGTGGGAGAGCTCCCTCAGTGGGGTCGAGACCTCGCCAGGGCTGGTGTATGGCGAGACACAGGTCCACATCACGGGGGACATCGCGTACGCCGCAAAGCTCTACTGGTGGGCTACTAAGGACCAGCAGTGGATGAGGGAGACTGGGTACCAACTTGCTACTCAGACCGCAGAGTACTGGGCCAGCAGGGCTAATTACCGTGACGCCGCTGACCAGTATGTGATCCAGTACGTCATGCCCCCCGACGAGTATCAGTTCCCTGTGGACAACTCGGTTTACACGAACGTCGTGGCCAAATTGAACCTGGAGTTCGCCATTCAGATATCAAAGATCTTGGGCAAATACTATCCAAGCAGATGGGAGTGGATCAGGGATAAGATGTACATTCCATTCGACACCGAGCGCCACTACCACCCGGAGTTTGACGGCTATCATCCGGGCATTAAGGTCAAGCAAGCAGATACCATCCTGATTGGGTACCCACTTATGTTCAACATGAGCAAACAGATTCGTCGAAATGACCTTGAGATGTACGAGAAGGTGACGGATCGTAATGGCCCGGCTATGACCCATTCCATGTTTGCGATTGGTTGGCTGGAGGTTGGCGACAAGAAAAGGGCAGCCAAGGCATTTGCTAGAAACTATGAAAATATTCAGGGACCCTTCAAGGTATGGACTGAGCAGAGCCACAGTCGCGGTGCCGTCAATTTCATCACGGGCGCCGGGGGGTTCCTCCAAGGCCTGCTCCACGGCTACGGGGGCGTGCGAGTACGCGAGGACAGTCTCGAGATCAAtcccaccctacccccctcAACCACCAGGCTCACCCTCACGGGTGTTCATTACCTTGGCAGCGTGATCGACATAGCCTTAGACGCATCACGTGTTAACGTGACGTTGACGTCTACGTCACAGATTGCGCCTAGTTTGGAAGTGGTGGTCAGCGGAGTGTCCAGAGTGCTGATGGAGGGACAGACAGTAAATATACCAAGCGGAAAGGCATTTGTGCGCATGCGCGCATAGGTGTGTAGGGTCTTTTGTACCGCAGTATCTTTTATTCGTTCcccaataaaaaagaaatcacaTGCCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1NZI4	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Gallus gallus OX=9031 GN=PGGHG PE=1 SV=3
A0JMP0	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Danio rerio OX=7955 GN=pgghg PE=2 SV=1
Q32M88	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Homo sapiens OX=9606 GN=PGGHG PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001492 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03632 all species →	Glyco_hydro_65m	Glycosyl hydrolase family 65 central catalytic domain	Repeat	Interproscan
PF03633 all species →	Glyco_hydro_65C	Glycosyl hydrolase family 65, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR005195 all species →	Domain	Glycoside hydrolase, family 65, central catalytic	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR005194 all species →	Domain	Glycoside hydrolase family 65, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11051 all species →	GLYCOSYL HYDROLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22078	PGGHG, ATHL1; protein-glucosylgalactosylhydroxylysine glucosidase	EC:3.2.1.107	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032232630.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

9.1Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	5.52	6.94
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.56	5.62
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.16	7.98
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	6.46	7.47
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.76	7.50
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	3.39	6.33
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.69	5.75
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	1.93	3.25
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.97	3.02
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.60	4.21
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	4.81	5.25
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.44	3.86
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	5.24	9.10
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.20	3.59
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.85	6.14
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.41	4.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.94
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.95
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.68
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.62
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.07
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.98
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.98
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.44
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.05
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.47
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.01
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.91
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.50
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.51
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.26
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.33
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.83
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.75
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.32
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.25
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.54
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.02
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.90
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.21
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.59
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.25
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.98
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.21
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.86
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.47
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.10
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.47
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.16
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.59
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.14
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.40
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.22
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.