Gene detail

Detailed information of XP_032232649.1 in Nematostella vectensis

Genomic Location: NC_064040.1:2793779...2801104
NR annotation: XP_032232649.1, inositol-tetrakisphosphate 1-kinase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032376758.2

AACAGCGGGCTCAACACTTACTCCACACATTCGAAAAACAACAACCCAACATCGTGACGGGAAAATGACTGCAAATTACAATCTTACGTAGCTTCACTCCATCTAAACTTCATTATGAGTTCTTCAAAGAATGGTCTTATCGTTCCAGCCACCATAAATAAGAGAGTGGGCTTTCTCTTGAGCCCAAAGAAGAAGCGAAAGACAATCTTTGACGCGTTCGCCCAACTTTGTGGaaaAACGGGGATCGAGTTGGTGGAGATTGATCTAAATGTACCACTAGAGGAGCAAGGTCCGTTTGATATTATCATTCAGAAGATTACTGACTATATGGCTGAAGCTACAGAAGGGGATGAGGCATCTGAGAAAACTGTACAGAGTTTAAAAGTTTATTTGCAAGCCCACCCCCAGGTCAAGGTTCTAGATCCCTTGGACTCAGTAGAGAAACTATGTGATCGCGTCATCAGCTACAAAGTGATGAAACAGTGTGAGATTCAAGATAATGGGTGGAAAGCATATATTCCCAATTTTGTAGCTATTGACTCATTAGACCAAAAAGAAAACCTCAGAAGAATAAAGGAAGCAAACGTTGAATTTCCAATGGTATGTAAATCCGTTATTGGACATGGATCAGAAGTGTCACATCAGATGGCACTTATTTTCAACCAAGAGGGATTACAAGACCTAAATCCTCCATGTGTGGTTCAGCAGTTCATAAACCACAATGCTGTTCTCTACAAGatatttgTGGCAGCCCATAAGTACTGTACGGTTGTGAGGCCATCTATCAAGAACTTCTACAGAAGTCAAAatttGGATCTgaaaaagacaatatttttCAACAGCCATGATGTTTCAAAGTCGGATTCAGACTCACATCTAAGTGTGCTTGACAAATTTGACGAGGATGAAGACCCAACCCCTACAGACAATATTCTTGTGGGGAAACTTGTCAAGAGACTTCGGGATAAATTGAATTTAACAATGTTTGGTATTGACATTGTTGTGGAAAAAGGGACTAAGAATCATGTGGTCATCGATATCAACTATTTTCCAGGGTATGAAGGGATGCCGTCATTTCCAAAAGACATGCTCCAGTACATTCACCTGCTGTTAGGGGAAGGAGAAGAAGAAGTTGGTCTGCTAGACATTGGTCCACCCACAATTCCAGTTATTAGTTGACTTTCACCTTAGTCACCCTTCCAGCACACAAATAAACCATTTAATAGGTATTTATAAGCTTGGTTCTCACCATGGACACCACAAGTTCAAACAAATAAGAACTGGTCAAGTGCAAGGTCAAGAAATCCAAGCATCTTCTTGCACTTGCACTTTCCTTTTTGAGTGTGTGAACCAACCTTAATTAAGATATCCCATCGATTCCGTTTGACATTTTGCATACTTCAAGACCTAACAACATGGGCTTGCAACTGGAGCATTACAGAGCTGGGTTCAAAATCTCAAATGATAAACATACAGTAATAGGAGCAATCATATGTACCATTTTGAAAACTACCCAGAAGTCTAGGACCAAGCTTGGTAAAGTCATAATTGCCCGCTTTTACAATTAAGTAGATGACATCATAATGTGCTTGTTTTGTTATGTCAATCTCACTAGTGCTCTAAAAGTTTTCAGTCATGGCTTGCTTATCAATTTGGTATTTTGTTTCCTTCACCTGTGTTGTAAGTGGCCATATTAGAACATAAACCATATTAGTTTGATGGCCCTTTCCAGTCTTGTCAAAAAGTTTAGTAAACTCTAGCCAATCAGTAGGGAAGCAACTTAAATTGCTGTGTAGAGTACTGTGGTGTATAAACGTGCCACAGGATGCCCGGGCATACTCAAAGTGTAAAGAAGAAGAGGTCTCTCATGATTTGCATGCACATTTTATTGCTGTTATTATCCTAGGACTTCTAACTTATGTAGATTAGTTGAGATGTATTATTTTAAAgcaaggggaagggggggactattttcaagaaaaagaaaacttataaagaaaaaatcgaTCTAATTATGGAAGAGCATTTTATGGCTTTTGAAAGGAAGGAAAAATTACATTAAACATTCgcgataaaaagcaaaaataattttaaattcCCATCGTTGAAATTTTCCTCCTAAATGCCACTCGTCATCCACTCATTTTTCGTAAATTACTAATATGCTTGTTTAATGCAGATTTAGTGGcagaaaatttaaataatcTGCAAACACTGCGTTTCTTAAAAGGGTAGCTTTTGACTTCTTCTCCAAATCAACGGATCTATTCATTCGGAGTATGCCAGTACCCTTTATTGACGGTAAAAAAAGGTTCTGATTTCGAATGAGTTGAACGACTCATATTGCACGATTAACAAATAAATTTGTCCGTTTTCATCCACAAACATACGCATGGTAACTGTGGTTAATTGGATGGGAGTTAGAGCCATTAACATGTATGTTTAGAATAACAGCCTTGGAGATATCCTGACTACCAATTCGGACGAAATACagatttaaagaaaaacagagTCATGTACAGTGCGtgaacaataaataaatttgtaTAACATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F480	Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus OX=9031 GN=ITPK1 PE=2 SV=1
P0C0T1	Inositol-tetrakisphosphate 1-kinase OS=Bos taurus OX=9913 GN=ITPK1 PE=1 SV=1
Q8BYN3	Inositol-tetrakisphosphate 1-kinase OS=Mus musculus OX=10090 GN=Itpk1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002819 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17927 all species →	Ins134_P3_kin_N	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain	Domain	Interproscan
PF05770 all species →	Ins134_P3_kin	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041429 all species →	Domain	Inositol-tetrakisphosphate 1-kinase, N-terminal	Interproscan
IPR008656 all species →	Family	Inositol-tetrakisphosphate 1-kinase	Interproscan
IPR040464 all species →	Domain	Inositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14217 all species →	INOSITOL-TETRAKISPHOSPHATE 1-KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0032957 all species →	Biological Process	inositol trisphosphate metabolic process	Interproscan
GO:0047325 all species →	Molecular Function	inositol-3,4,5,6-tetrakisphosphate 1-kinase activity	Interproscan
GO:0052725 all species →	Molecular Function	inositol-1,3,4-trisphosphate 6-kinase activity	Interproscan
GO:0052726 all species →	Molecular Function	inositol-1,3,4-trisphosphate 5-kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0052746 all species →	Biological Process	obsolete inositol phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00913	ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase	EC:2.7.1.159 EC:2.7.1.134	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032232649.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

54.3Max TPM

37.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	35.55	40.39
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	29.87	36.53
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	28.32	29.22
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	33.47	41.01
whole 6 week old aboral regenerate · regenerate uncut	3	3	28.28	30.25
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	43.50	47.75
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	39.67	43.53
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	44.60	53.81
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	39.65	40.06
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	35.84	38.04
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	37.75	40.36
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	46.58	54.29
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	39.94	41.31
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	45.26	50.39
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	38.71	43.14
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	36.74	41.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	40.39
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	36.92
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	29.35
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	36.53
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	27.60
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	25.46
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	29.22
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	27.90
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	27.84
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	41.01
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	33.31
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	26.10
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	30.25
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	28.85
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	25.75
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	47.75
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	47.03
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	35.71
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	43.53
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	40.75
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	34.72
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	53.81
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	43.35
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	36.65
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	40.06
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	39.86
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	39.03
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	38.04
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	37.38
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	32.10
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	40.36
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	36.73
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	36.16
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	54.29
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	47.06
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	38.39
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	41.31
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	40.62
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	37.89
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	50.39
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	45.09
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	40.32
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	43.14
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	39.63
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	33.38
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	41.65
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	38.58
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	30.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.