Gene detail

Detailed information of XP_032232654.2 in Nematostella vectensis

Genomic Location: NC_064040.1:2739179...2742328
NR annotation: XP_032232654.2, uncharacterized protein LOC116615103 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032376763.2

GGAAAGGAGCGAGTAGAAACAAACTGGAATAAGACTTTTTGACCCCCGAAAAATACCTAgccccattttttttaaatgagacCCCAAAAAGGGAAAATCCCTTTTTAGAATCATTGACATATTCAACCATATTATTTTAGACTAGTCCAATTTCATTTTGGACTGGTTTGGTTTCATTTTGGACTAgtccatttttattttggatTAACATTCATTTTCGACTACAACAGATACAATTCGCCAATGAGGAAGTTGAGATCTGAGATGCTGGCAGAGTTTAAGTATTTTCTGAGGGATCCAACTGACAAGGGGAAGGACAGAGTAAAATCAACACCATCAAGCAATGTAATGGAAGCAAATACTGACTCTTTTCTGAGGCAATGGGAAAGTGTTGAGTATGAAGGTGAACAGATTGTTCCGGAGAAAGGTATAGCTGAGATTAACAAATTGCTGGCTCATATCAGAAAAGGTTGCTTATCTGGCATTCCTCCTTCAGGTGGCACCAATCGTAATGAAGGTATACACAGAGTACTCAACAAAACACTGAAAAGATCGAGACTTGGCCTACAGTATGCTTTGGCATTGCTTGCGGTGTTTTTCTATATTTGGAATGAGGAGAAACTGTCTATGACaaacaaaaagagaaagatcAGGGTTACTCCCCCAGTTGAAACACACTTTAATGATACAACATATTGCAATGGAACAGAACATCATGCAATTTACAACCAATATTTGAGGGATGTTCTTTCAATTGAGGATGCAGCTTTGTGATGTGTTGAAGATGTGTTAAATAGACTGCAGGAATCCTATAATACAAATTGTGATAACCTTTCAGAAGATGAAGAATTAGATAGAAGTGAAGATGTCAAAGATTTTTGAGGAGCATGAATTCAGTGTCGGTGATGCTGGGAAGGAGTTTATTTGTGCTACATCGAAGGCATATGAAGAATTAATAAGAAATGTTGTTGATCAGTCTCAGGGGAGTTATGGAAAGCTCAAACCAAGCATTGCTATGTTTGAGAGTAGCATGTTGGGTCTAGTCAGTTCCAGTTTGCCTGGTAAATATAACTCCTCAGCTCTAGATGATATACTTGCAAACTTTGCAATGACTAGAGACCCAGTCCCTGGTATTGGAAATTGTTTCTACAATACAGTGTCGCATGGCCTTATCACGACAGTCTTCCCAAATATAACTTCCTCGTCTGATATTGGGAAGCACCTGTCTTCTCTAGGGTTACATGGTGAACAAGGCATGTACGATATGGCATTCAAGTTGAGGTTACTCAATGTTAATGAGTGGCTAAATGACCTAGAACCATACAGGCTATTTCTGCTAAACGGAGAATCGCTAGAAGATCAAGCAAATGCCTTTTTAAATGATGGATATTTCAATGCAGCTATTGGAAATATCATGGTTCCAGGAATggcaaatattttgaaaatgcCAATAGTGTTATTGTCCCAAATGCAAAATTTCCCTGTGGTCCCTGTTTCACCAACTAAAGGTACAGTGATAAGTACACCACTCTATCTAGCCTTCGACCAATCTGGTCTTGGCCATTATGATGCTATTGCTATGCGGTCTGAACAACCTGAGACAGATGAAAGCAAGTTTGACAATTCTGCATCGCAAAAGGCCAATGGGGCCAATAGTGCTGGGAGCTGCAGATGCGGCCAAGGAGCTAAGAAAAAGGAGAAGGATTTAAGGTCATGTCACAGCTTTAAATCAAGGTGCAAATGCTTTCAGAGTGTTAAGCGGTATTCTGACTGTGACTGTTTAGGTTGCGAGAACCCTTATgggaaaaaaatgcaaaggGACCATTCCAAGGTCACGCTTACAAGAAAAAGAATGGCAACAAGGATGACAACCGAAATGGTGGCAGGAAAGAAGTTTGCACAAAAACTTGATGGCACGGGCAATATTGCTCATGGCTGGACCTTGTTTGAGGAACTAATAGTTATCCAGATCCTCCAAATGCAGCTGGCAAAGGGAGGTATAGATATTGATTGCATTTATCAACACTTCTTACAACTGGTGAGTTGTAATGTTAATCCTAAATCTATTGCACAAATATCAAGTAAAGTGATGTCACTTATCAGTGATGATAGAGTTTTTAGAACTAAACTGAAAGAACAGGCCCGCATGAATTGGTTTGGTCATTAGATCTAGCAAATTTGTGTATAATTGTGAACATTTGATAATGTCTGTCAAACTATGCAGGAACACTGCCAGATTTATGTTATTAGTATAATATATGGAGGCAAGCCACAATCAGATCCATTTAGCAAAAATAACATGTATAAGCTTACAATACATGTATATCCTGTATATGCTTTTTATGTTTAATTTAATAGGGATGTTCAAATTTCAGTTACTGTTCTTTATTGTAACAAACTAAATTTCTAGTCTAAATTGAATAATGTAAGTCTTCtgattatattattattaccagAACATATTTTGACATTCCATTAACTTGGTTAATATGTGTTAAATGCAAGTTACAGTTTATTATTACATTGATTTCAAAAAAGGCAAGTTACAAGTTTTTGCTTAGTCTATTAAAGATACCTAGTGCCAACAAATGTTGTTCTAAGGCATTTTCTGAAAAGAGAATAAAAGGTGGTAGTTTAAGAATATGGACTAGCTTTGATTCCCTGATGAACATAGACTTTGTGTTTCCACCTCGATTGGTCAAAGCGACTATTGAAATTGGATGAGCTAATCGTAACAGTGAAACTGGACCACTGGACTTAGCACCGAATTCTTGAAATGGCTTCCCAGTCGCACGTAACATCCGCATCACGTCGGGTacgaaattttatacccgATAAAACACTGCTACTACTGCTCGTGTTTTAAATAGTACATCGATACTAAGTGAAGGAAAATTTCTTGCTGAACATtctatttattgtgtatgagCCTTACAAACGGAAGCCATCAGcggaaaataaagaaaaccacGGATTATGCCTGGCACAACGCAAAAGCGATAATTGCTGATAAGAGTTGCCGCAGAGTGGTCGCTGTCCTGGGAAATCTTTACATAAAATCTACAGTAGATATCTTAAAGCGCAGCTGAAAATATCTGTAATTTGGGCCGTGTCGCGTATTGTCCCGAAATAAACATAATCATTCCACCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000136 (this species only)
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16682 all species →	MSL2-CXC	CXC domain of E3 ubiquitin-protein ligase MSL2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032049 all species →	Domain	E3 ubiquitin-protein ligase Msl2, CXC domain	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan

PANTHER

No PANTHER signature was detected for XP_032232654.2. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for XP_032232654.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032232654.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032232654.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

34TPM > 0

16Conditions

0.3Max TPM

0.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.04	0.13
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	0.20	0.25
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	0.16	0.22
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	0.21	0.25
whole 6 week old aboral regenerate · regenerate uncut	3	3	0.14	0.23
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.03	0.08
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	0.12	0.27
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	0.08	0.14
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	0.21	0.27
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.06	0.14
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	0.15	0.18
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.18	0.27
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.10	0.16
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.01	0.04
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	0.08	0.16
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.05	0.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.13
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.25
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.17
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.16
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.22
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.15
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.11
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.25
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.23
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.14
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.23
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.10
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.08
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.08
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.27
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.07
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.14
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.10
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.27
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.27
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.10
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.14
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.05
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.18
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.16
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.11
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.27
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.26
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.16
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.15
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.04
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.16
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.07
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.15
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.