Gene detail

Detailed information of XP_032232830.2 in Nematostella vectensis

Genomic Location: NC_064046.1:1802737...1809557
NR annotation: XP_032232830.2, uncharacterized protein LOC5508153 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032376939.2

ATTTCGTGTCCTCGTTAATGCAATCTTTTGTCCAAATCAAAGTGTCAAGTGGTACTACCATTACCAGTCAAAAGATATATTAGCACTGCTAGTGTTAAAACCACCCCTGACGAGAAAAAAACAAGTGTATAAAGTCTTGAGAAATGTTTCTAGTAATCGAACAGGCAAGAAAATTGGTCTTACTATGTTCACCGTTTCTTATCAGAACTCGTTTTTACagttttcatttcaattcttACTGTACGTatagaaaaatatcaaaaaggTAAACAATTACCGGCCTTGTTTGATAACTATGATCATATCAGTGAAATGAGATGACTTGAATTAGaaaaatacacacacacacacatttcaGTTAACTGGTTAAGGTGACATTGTGAAATAAGAAATGTTTGTTTGGATGTTTACAAAAACTCTTTGAGCATCGTGATGCACACATCGTGCTCTTATACTACCAGGGGAATTGAGATTAAAACTCTTGTCACCTACGCAAACATACCGACACTCGAAACGTTGGCGCTACTCACGAAACTTGTTCTTAGACATACAATACGCTATTAGAAGCTAAAAAAACCTATGTTTTAtcgaaataatattttttttcggacTAAACTCCCCGGAAAAGGTTCTCGAGTCTCATTTTTCTCTTCGTATTAGCAGATCGGCGTCAGTGTGTATATTGTGTGTGATCGTGGAAAATCATGATTCAACGCAAGAAAAAGCCGCTTATGGTCATGTAGGATATTGGAGGGAGCAGACAACACATTTAATTATATCATCTTAACTAAAAGGTATATATACTCTGAGAAGTTAAGAATAAGAAAGTGTTAAGTTTTAAGCGAACTGCAAGTGCACCAATAAAcatgcataaaatatatatactttctgtatgttttttttaataaacatACTCTGTGAACGTCGATTTTTCTTGCACATAAGCGCTCTTGCATTTTTGCGCACCGCGTTTTTTCGCGCGCCAAAACAACAAACTTGTCTTTCTTCCTGTGGCGATCCATGCGAGTAAGCCTGGGTAATAGTTATTGTGTATCATATCTGCAAATGGCGGCCCGAAATGTTCGAATATCAAGCTGGTTTAAAGACGCTTTGTCGATCGCGTGATTGATAACAAAAATGTCTTCACGTATACTAAAGTTCGAAGTCCCAGAAGGCAAAGAAGAAATAGTAAGAGAAGCCATTAGGACAATAGAGGGCTgtagagaaataccaacaccAACTGAGACCGAGAGAGACAAAAAAGATGACATGATTGTGAATAGCACAAACCCAAAGGAGATTGTAGAACGTGTGAGCCTTTGGCTCAAAAGAAATAGGGTATCCCAAATCCAATTCGCCAAGACTATTCTAGGCAGGGGGCAGCCGACCCTAAATGCTTTACTAGCTCAAGGGCAAACAGAGGAGTGGCCAAAAGAAGGGACAAAGAGGCGGCACTATATCAAAATGTACGACTTTATGGAAGACGAAGATTTACAGAGCACCCTGAGATTAGCTGGTGCTAAATATGAGCACCAAAGAGTAAAGGTTTACTCACACGAGCACATCCACAGACCTAGGACACGCTTTAGTGATTTACAGCTTGCAGCGCTCGACATGCTCTTCACCAAAACTCAAAACCCATCTGTGGAAGTTTTAGAAGAGTTATGCAATACTTTGCACTTAGAATTAGCACAGGCACAAATATGGTTTCAAAACAAGCGGCGACTGCTAAAGGAAAACGCTTACACCCCTGGCCAGTACCAGTTTGGTGCCCCGACTACTGTGAGATTAGATTCTCCAAGTATTGAAGTGAATATATCAAGTGATGATAAAGTAAATATACCGAGAGACAATGAAGTAAATATACCAAGTGATATTGAAAACAACACAGAATCTGTCAGCATAGATGTTCCAAGTATGGTAGTAGATATACctaatgaaaacaaaatcaaatcaGAATCTAGGACCGCTCAAGGGCAAACAGAGGAGTGGCCAAAAGAAGGGACAAAGCAGCAACACTATATCAAAATGGACGACTTTTTGGAGGACGAAGATTTACAGAGTACCCTGAGATTAGCTGGAGCTAAATCTGAGCATCAGAAAGTAAGGGTTTACACACAAGAGCACGTGCCCAAACCCAGGACACGCTTTAGTGATTTACAGCTTGCAGCGCTCGACATGGTCTTCACCAAAACTCCAAACCCATCTGTGGAAGTTCTAGGAGAGTTGTGCATTACTTTGAACTTAGAATTAGCACAGGCACAAATATGGTTTCAAAACAAGCGGCGACTGCTGAAGGAAAACGCTTACACCCCTGGCCAGTACCAGTTTGATGTCCCGACTACTGTGAGATTAGATGCCCCAAGTATTGAAGTGAATATACCAAGTGATGATAAAGTAAATATACCAAGTCATATTGAAAACAACACAGAATCTGTGAGCATAGATGTTCCAAGTATTGAAGTGAATATACCAAGTGATGATAAAGTAAATATGCCAAGAGACACTGAAGTAAATATACCAAGTGATATTGAAAACAACACAGAGTCTGTGAGTTTAGATGTTCCAAGCATTgaagaaaaaatatcaagTCCTGCTAAATCCTGACATACGAGGATACATGAGTCTAGCGTTGCATATTCTCTTGAGGGAGGTTTGACTATGCCCTAGGCGTTAGTAAatcattttacttgtttgAAAATCTTTCACATCTTATTGACACTGAATTGATTCTGTTGGGTTATAGAAGATTCACATCACAGTTCACTCCAACTTCAAACGAGGCAGTGCGTTACTGGGATCCTTAGAGTGGCCGACCGAACACTGCGAACTACCTTAATTTTctcgacgtcaaaatttcgcgattttgagatggcgatatttcgcgacactttattttcgcgattttcctattttcgtaaaaaccagattactttattttcgcgatttcgcgattttggaataataatatcaagcaAAACAggtggaattaaaatgtgctgtaatcatcaaaactgaaaaaaaaattgtaacaaaaagatgcgaGGGCTAATtttagtttcataaaaatctataaatacaagtccaaACTTTGGTTGGTTGAGGCTCAACCCCTtaccgtactatatgtacatttaGACACACAAGGTGTTTCCACAAAGCTTATTAAACTGCCAATATTTACCAAAAGGCTTCTggtgtactcacttaattttcgcgcatcATAATTTTCGCggcacttaattttcgcgtcattATATTGTGTAATAAGGTACTCATAGTATTATTTTATAGTTGACAGTATGTTGCATTGGCTTGCGTTACACTCCACTTTAGTGCTAAGTAAAACAAGGTGTGCGTTACACTTCTATTAAACATCCTTCAATATAGACTCCAAGAAGTCGCTGTGTCGAGCGTCTGAGAAGTAAAACGGCGACTGCTTCGAGTCTGTGTTGTCTACCTCCTGTAAGGAATGTGTTACAGCGGGCTGCAAGGTCACGGGAGGGTAAGTTTAAATCTACAGCTTCCTTAGAGGAGAAGAGACAACCTTGGCGCGCTCTGATACTGAACTTGCGTCTTCTTTCTATCTGGAGTTCAACCGTCTTACACGTTTGTGGGATAATCGCTAAATTCCATGGTGCGCACCTTTCAATAATTGCTctagatataaaaaaaagcgaCGTTATTTATAGCCATGATAGATTTTGGTGCATATTAATTTATTGATTTAATCCCCTAATTCGCTAGCTTGCCTCGAAAGTAAATAAGGCAAGGAAAACATCCCTGTCACATATTATGTCTAGTTCGTTACTCAAGCATACGCGATGTCCCCTTACCAGATCAAAGCATGACGTCTCCGTTTAACTCAATAACACCGCAGAAAACAAGTAGCCGCCTCCAGCAAGCGCGAATCTCAACCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF02376	CUT	CUT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR050460	Family	Distal-less homeobox transcription factors	Interproscan
IPR003350	Domain	CUT domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24327	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08036	TCF1, HNF1A; transcription factor 1, hepatocyte nuclear factor 1-alpha	-	Transcription factors	ko03000	deepkoala