Gene detail

Detailed information of XP_032232845.2 in Nematostella vectensis

Genomic Location: NC_064046.1:2291966...2304098
NR annotation: XP_032232845.2, phosphatidylinositol-3-phosphatase SAC1-B [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032376954.2

TAGTAAGGCCGCTGATGATTTCCGCAGGCTCGTATATTGCCTCGCGTGCAAAATGGCGGATGGTGGTTCGATATACCGGGCTCTACGGCTCCATACCTCGCCAGAGAAATTCTATATTGAGCCAAGAGATGTGCAATCAATCGGAGACAAAATATTGGAGATTGATCGAGTCAGTCAGGAACTTTCTTTGACAGaTAATGAGGGACAGATTCCACCTTCTGCTGACAGCGTGGACATATTTGGTATTATGGGCATTATCTATTTACTGGCAGGCCCATATCTTATTGTGATCACAAAGAAGAAGCTGGTTGGGTATATTCAGGGCAGTGAAGTTTGGAAAGTTCTGCAGACAAACGTTATACCATTTCCTAGAGCTACACTCCACCTCACTGAAAGCCAGCAATACCACAACAAGCTATATCTCTCTATGGTCCAGTCTGTCCTTCAGACAGAGAGCTTCTATTTCTCTTGTACATACGACCTTACACACACTCTTCAACGTCTATCAAGAACTAGTCCAGAATTTTTACAGATGCCTTTATATGAGAGGGTTGACCCAAGATTTGTGTGGAACAGTCACCTGTTAACTCCTTTCGCAGTGCAACCAGAGCTCCAAAGGTTCATCTTACCAGTTATGCATGGATTTATCAGTATCACATCTTGTTCCATCAAGCAGAGATCTTTTGATTTCATCTTAATCTCTAGAAGGAGCTGCTTCAGGGCAGGCGTGAGGTACTTCATGAGAGGAATCGATGGTGAGGGCAATGCAGCTAACTATGTAGAAACAGAACAGATAATCCAGttcaacactggcacatcatcATTTGTCCAGATACGAGGCTCCATCCCTTTGTACTGGACGCAAAGACCAAACCTCAAATACAAGCCCAAGCCACAAGTCAGCAGTACTGCTGATCAtAGCCTTGGATTTCAATACCACATTGACAACGAGATAGCACACTATAAAGAATTAGTTCTTATCAATCTGATTGACCAGAAGGGGCCAGAAAAagctcttggggatcgtttctcCTCAATAATTAGGAATTCACCTTACAAGGAGACCTCGTTGAGATATGAGGCTTTTGATTTCCACAAAGAATGCAGTAAGATGAGATGGGACAGGCTCAATCTACTGATTGACAGACTAAGCCCTGACCAGAAGAAGTTTGGATATTTCAGTATGGGAAAAGACAAGGACATACAGTCGGAACAGAAGGGAGTGTTTAGAACCAACTGCATTGACTCGCTTGACCGgACAAATGTAGTCCAAAGCATGCTGGCCCGGAACAGTCTGCAGCTACAACTTGAGGAATACGGCGTTCTAGCAACTGGAGAAAGAATTGTTGACCATAATGACTTTGAATACACTTTTAAGAATGTCTGGGCCGATAATGCTGATGCCTGCTCAGTGCAGTACGCAGGAACTGGGGCTCTCAAGACTGATTTTACAAGGACAGGCAAGAGGTCTGTGTTTGGTGCGATGCGAGATGGAGTCAACTCCATGATCCGCTATTACAAGAATAACTTCTCTGACGGTTATAGGCAGGATTCGATAGATCTGTTTCTTGGAAACTATGTGGTTGATGCTAATGAATGTGTGTCCAAGGTGTGCCCGCTGCAAACTAAGCGAGACTGGAGATACATGATGCTGCCTCTTATCCTGCTGTTTGGATTCTCGATGTTCATAATAAGCGTTCTTATTCCTTCAACTGATTATGGTATCCAATTCCTGTATATCTTGTTCTGGGGTGCAGCGGTGCTCTTCACACTCTATGTAGTCATGTTCTTTGGTACTGAGTATGTGGATCAACCAAAGCTCGTACAGACACAACTCAAGGACAAGAATGTATGACTAGACCGAACACATCCATCGTCCACCAGGGACTTTCGCTACTACGACTGGGTCTGACACCACATTTGTGACACCTGGCATTCAAAGATTCTCATTGATTTCTCATGGAAGAATTGCTTCTGCATAAAGAcaagtagcggatctagggggatgGTTTAGGGGGTTTTAACCCCTCCTCTTTGGGCTGACATATGAAATGAAACCCCTCCCCTTTTGTCaatgagccaaacccccctttaTCGAAAAGCTGTATCTGCCCCTGTAGACATACCCTTTACTCCAGGGAATGGGAAGGAGTGATAGGGAAAAGAGACAATGAATCTAGGGGGACCTTGTATATTGGTACCACCTTCCAATCTGGAGAAAATTCAACCTTCCCCTGGGGGACCTTTTTCATCAGCCCCTTGTACTCTGCCTGGTGATGTGATCATGACCAAGGCAATGTGACCTGTCTATATTTTCTCTAGATTGTAACAACTTTATAAATTGTAACTGAGGCAAGTGCCTTGATTCTCCTGATCCTGGCTATGGCCCTGAATGTCCACTGGCTAACAGATTTAAACAGGGTTCATGTAACCTTACCTTGCAATCATTTTATTGCTATTCTATTTTTTGTTGTCTATTTTGTTGAGCAAGTGCTTGCCTCATGGAATAATTAATCTACCAAACAGCCCTCTGTCTTTGATGGTGGTGGATGTGTCGAGTCTAGGTTCAAGTTGTATTTATCAAGGTTGTTGCTCGATATTTTATCATGGTCTGATCAGAATGTAAAGTGAAAAATTCAAAAGTGGAACGTTGACATGTTGAAATTGTACATATTatatgaaaaatataatagAAATAGCTGAATTTTATGGGTCATATGCATACCTTGATTAACCATTCTTTAGAAGTGGACATGGCAGCTTATAAGGATACAGAATCTTTATGAATAAAATGGTGCTTTTTTAGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L244	Phosphatidylinositol-3-phosphatase SAC1-B OS=Danio rerio OX=7955 GN=sacm1lb PE=2 SV=1
Q6GM29	Phosphatidylinositol-3-phosphatase SAC1 OS=Xenopus laevis OX=8355 GN=sacm1l PE=2 SV=1
Q9NTJ5	Phosphatidylinositol-3-phosphatase SAC1 OS=Homo sapiens OX=9606 GN=SACM1L PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004929 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02383 all species →	Syja_N	SacI homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002013 all species →	Domain	SAC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45662 all species →	PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0043812 all species →	Molecular Function	phosphatidylinositol-4-phosphate phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21797	SAC1, SACM1L; phosphatidylinositol 4-phosphatase	EC:3.1.3.-	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032232845.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

16.6Max TPM

10.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.95	13.35
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	10.33	14.09
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.15	8.19
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	11.76	13.68
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.24	8.71
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	4.08	12.24
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	8.55	12.94
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	14.61	16.58
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	14.37	15.52
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	11.72	13.39
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	9.98	11.19
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	14.24	15.87
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	9.34	14.53
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	9.81	16.17
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	7.90	12.65
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.25	12.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.35
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.05
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.45
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.09
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.65
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.25
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.19
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.13
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.13
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.68
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	12.15
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.44
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.71
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.24
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.77
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	12.24
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.94
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.69
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	16.58
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.06
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.20
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.52
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	14.75
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.85
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	13.39
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	13.35
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.44
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.19
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.41
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.33
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.87
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	14.74
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	12.12
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.53
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.49
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	16.17
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.27
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.65
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.06
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	12.74
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.