Gene detail

Detailed information of XP_032232946.2 in Nematostella vectensis

Genomic Location: NC_064048.1:1431156...1437916
NR annotation: XP_032232946.2, uncharacterized protein LOC5508265 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032377055.2

AAGTGACATCAGAGACGGAACAATAGAATATGACTACGCATACTTGCTGCCACTAAAAGACCCTCAAATCGGAAGAATTATCATTTGATGGGAAGACAGGAAAGATGTATGTAGCTGCGAACATAAGCCATTAAACTTCGATTCCTGGGAAACTTTGAGGAAATAGCAAGACAATGGGAACTTCAGACTCCCGGCAAGGCAAAGAAAGCGACGAACTTCAATCCCCACCGAACTACCTGTGCGTCACTGCGGTAAAGCCCGCAACAATCCATCTGATTAATGGCGGGAAAGACGAGCAAATAATCATCCAGGAAGCCATCACAGAATCATGGGAACAAGGAATCAAAGATGAGACACCACAAAAGCACGGCCACTCGTGGACCCTACAGGAATTTCCTTTTGGGTATAACAAGCAAGGGTTCTATTGCCCTGCCAGGGAGATCCGTGTCTTGTCTAAGATCATCCAAAGTTTAGATAAAAATGGATGGCTTCTTGCAGGGGTAGCCGACCTCTCGAGGCGGTTTGTCTTCTCCCAGTGGTTTTTTATCCGAGGGAGTGGCCAACATAGCGAGTTGGACTACCCTTGTGTCTCGCTTAGCAGTGTTGACACGATCTTATTTGTTAATATTCCGAGTCCGTTTTATGCTCGGATAAAAGAACTGATCCTCAAATATTGGGATAAAGGAATAAAAGAGAGCAAGGAGGAGGAAAACACGCTTGAGTTGCAACTGAAAGGCAAACCCTGGCATGGGAAGATACTCTCAATGCCTGCAAGACTCCTGATGACACAGCTGTTTGGGCTCTTTCACAGGAAATATAACCTGGAGCTCTACTGCCGATTGAACCTGCGCTGTAAGGCAGACAGTTTCTTGTTCAGACCTAAGGTAAAGGAGTCGAAGGATGAGAATACCTTTATGGGGATTTGCCTGTACGGAAAGAGTGGTGTCTTGATAATCGACGCACAATCTGAGGCGATAACAATTGTGCGCAAGGTACTACAAGAGACGTGGATGTGGCGCGGAGGGATCAAAGATGAGAAGGAGTACGTTGCATGTTATGGGTTTACCCTAGCTGGATCGCCTTGGTGGTCTAGGAAACGCAAGCAGAGTGCTATGTCCAGACTTGTTATATGTCGACTGATTGAAGAATTGCAATCGAGCAGCTGGAAGATCATTACTGGCGCCGCCTTCTCCAAACATAGCatgaacaaagacatgttagtcTTCCAGAAGTGTAAGCCAATGAATGTAAGTTCTATGTGCCTTTGCCCGGTGGGCGCTAACAAGTTACGCCTGGTTAACGCAACCTCGGAGATTTTCGCTACAGTCAGAGAGCTTATTCAGACCCACTGGCCGACGCGCATCAAAAGAGAGAGACGCTACAGAACGCCGGCAGCCTTCTTGGAGTTCAAACTCAATGGGAAACCATGGTCTGGGAAAACTACCGACAGCTTCTCTGCTTCAAATATGATGTGTTACATTATGCAAGAGTTACAACGACAAGGTTGGAAGTTGGCGCTGTCAGCGGACATTGCTGCGAAGTACATGTATCCTGGCgaggatgatgacgacgatgatgatgacaactaCGCGATTGACGTACAGAGTCTTTGGTTTGTTAACCAATCACGAGTGGCGAGTACATCCGGGAAGGAGGACGACAGCCTGTTTGGAGAAGAGAACCCATCGACAACTTTTCTCACTGAGACTACGGCTGTACGTTGAATATAATAACTGGATCGTAACATTACCTGTTTCAAAGGTATTCAATACGTGAAatttttcaattcaatttACCGGAGAGGTGCATCAGTCGAAAGTAAGAGAACTATTGAAAGAACCTTACTCGTTTATAGTTTACATGTCATAAATCCTAAATAGCATTCAAAAGTCTATTTGACAACAGTAGCCGGTATGTTTATAATAATTAGATACGCAATTTGTAGCACTAGGGCAGATTAGGGTCTGTCTCGATATAGAGGTACAGCGAACACGGAATTTCACGAGTGAAACCCGAGAGGAGCACGTCTGATTACGAAATGTAACGGGATTGACCCGAGATAAACGCAGCGAACACGGAAGTTCACGAGTGCAACCCGAGAGAGCACGTCTGATTACGGATTGTAACTGGATTGACCCGAGATAAACGCAGCGAACATTGAACATCGTTGTTAGCATATAACGTACGATGGGATCACAGTGCATTGCACAACTCTCCAGTTAGTGTGTTCTAAAGGGAGAATTTCATTAATTTTGTAGTGTGTTCTGGAGGGAGTATTTCATTAATTTTGTAGTGTGTTCTGGAGGGAGTATTTCATTAATTTTGTAGTATGTTCTGGAGGGAGTATTTCATTAATTGTGTAGTGTGTTCTGGAGGGAGTATTTCATTAATTTTGTAGTGTGTTCTGGAGGTAGTATTTCATTAGTTTTGTAGTGTGTTCTGGAAGGAGTATTTCATTGATTTTGTAGTGTGTTCTGGAGGGAGTATTTCATTAATTTTGTAGTATGTTTCGAGCTCGGGTATGATTTGCTGCATACTCACAAGAGTTCTTTGCAGATGTTCCCTGGATACGGAATGAGTAGGTATATGGCTTAATATTGAAGATACATATATACAGATATTTACACCAATTACTGAACACTTGAATATCAATTAGGAAGTAATCAATTAACCCCACCAAGGCAGAGAGGAAAAGAGAGAAACAACGAATCCAACGAGACAAAAGGGTGTGACCCATCTTTTTCTATCTCGATTTCCACAAGGCCAATTGTAAACCTACTTTGTTCTATTCAAAGAACAAAATGGAATGTACCATCTCCTTCATTAAAACCCCTAAAACCAGGGGTTGGGAGAGGCTTCCCCCCTAAAAAAGTCATATATGCTCATCGAGAAAATAGATTTtacccctaagggatagctgAATGGTTAAAGTCACAGAAATTACAACcctaaaaaagaaatttgCAGGGTCTTCTAGACTTAGTTGTACTTTGTTGTACCTATTCCAATGCATGATAATCTGTTAGCATATCAATTTATTTCTTGTCGGCAAACAGCTCAAAATACACTAGAGGATAGCACTTGGGCAAGTTTACACCCTATGGGATACCATGAGCATATGTGACTATTTTACCATTTACggggaccccccccccccggcatAAATTAACAATTCAACAATATAACTGTACTCAGTCTGATAGTGCTATAATTTGATATATAACTCTATAAATAACCAGgggcgtacacagggggtttACAGGGTGCGCACACAcccctcttggcggccaaaaagtggggtATTTCTTGTTGAGGAATATTGAAATACTatgatttttccatatgatacctatgactgcacaccccacccccccccccccccctcggccaatcctgggaagacggctgattattatttttttataacaaagcCTATGTCACTTGTACTGTTATATATTGATGTACTGTGTGTATGTACTGcttgtatttgtatttctgttgttgttgatggttttttataaattgCAATCAATACATGCCCTTGACTATCAGTCAAAAAATTTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001059 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for XP_032232946.2 in Nematostella vectensis.

InterPro

No InterPro signature was recorded for XP_032232946.2 in Nematostella vectensis.

PANTHER

PANTHER term	Description	Source
PTHR38696 all species →	-	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_032232946.2 in Nematostella vectensis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032232946.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032232946.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

3.0Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	1.59	2.36
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.30	1.61
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.31	2.97
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.89	2.18
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.84	2.28
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	1.16	1.89
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	1.65	1.86
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	1.94	2.81
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	1.53	1.90
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	1.41	2.09
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	0.95	1.06
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.15	1.93
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	1.53	1.77
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	1.18	1.83
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	1.26	1.80
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	1.30	2.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.36
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.13
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.27
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.61
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.27
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.03
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.97
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.64
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.31
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.18
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.93
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.56
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.28
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.87
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.36
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.89
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.59
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.86
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.60
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.51
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.81
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.72
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.29
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.90
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.60
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.10
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.09
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.09
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.06
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.06
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.93
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.85
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.93
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.52
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.77
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.76
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.04
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	1.83
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	1.70
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.80
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.14
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.82
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.07
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.84
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.