Genomic Location: NC_064045.1:6313108...6358189
NR annotation: XP_032232965.2, fibrocystin-L-like isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5508301 |
| Transcript |
| rna-XM_032377074.2 |
| Protein |
| XP_032232965.2 |
| UniProt accession | Description |
|---|---|
| Q86WI1 | Fibrocystin-L OS=Homo sapiens OX=9606 GN=PKHD1L1 PE=1 SV=2 |
| Q80ZA4 | Fibrocystin-L OS=Mus musculus OX=10090 GN=Pkhd1l1 PE=1 SV=1 |
| E2RK30 | Fibrocystin OS=Canis lupus familiaris OX=9615 GN=PKHD1 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001248 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10162 all species → | G8 | G8 domain | Domain | Interproscan |
| PF01833 all species → | TIG | IPT/TIG domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR011050 all species → | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR012334 all species → | Homologous_superfamily | Pectin lyase fold | Interproscan |
| IPR019316 all species → | Domain | G8 domain | Interproscan |
| IPR006626 all species → | Repeat | Parallel beta-helix repeat | Interproscan |
| IPR037524 all species → | Domain | PA14/GLEYA domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR036439 all species → | Homologous_superfamily | Dockerin domain superfamily | Interproscan |
| IPR002909 all species → | Domain | IPT domain | Interproscan |
| IPR052387 all species → | Family | Fibrocystin-related protein | Interproscan |
| IPR008972 all species → | Homologous_superfamily | Cupredoxin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46769 all species → | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000272 all species → | Biological Process | polysaccharide catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K27624 | PKHD1L1; fibrocystin-L | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of XP_032232965.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 5.48 | 7.08 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 3.97 | 6.15 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 4.68 | 6.58 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 6.04 | 9.15 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 5.66 | 6.69 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 6.19 | 9.95 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 5.42 | 6.08 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 8.20 | 10.49 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 13.18 | 14.62 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 16.22 | 19.09 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 14.11 | 16.56 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 5.40 | 7.11 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 5.04 | 6.47 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 2 | 4.83 | 8.65 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 9.17 | 10.89 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 2 | 7.29 | 14.41 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
