Gene detail

Detailed information of XP_032233015.2 in Nematostella vectensis

Genomic Location: NC_064039.1:8544854...8551445
NR annotation: XP_032233015.2, uncharacterized protein LOC5508361 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032377124.2

CATGAGACCCGCTAAAGTGCGACTTTGGTGTCTTTTAGGTCGTGTGCCAACTAGAGGGAATTTATTGTGTTTGCACGAAACTTCCTTATAGAATTCCCATCTTTTGCAATTGCACAAGCTTCCAAAATGTCGAAGCTAAAGTGCGAGTGCTTGAACATTACCGTGCACGTTCAAACAAACGCATCGCGTGAGACAGAAGGAAAAGACTTCGTGTCCGAATCTTGCACTAATGTCTTCTTCGCGGGCAAGTTATTGGAAGTTGAGCTAGCTGTTGGCGGCATAAAGATGGAAGTAGAAAGCCTGATACGGAGTAACAGAGTTGAGGACTGGGATGTTTATAGTTGTCTCAACTGTAGCATGGATTGCTATGCTTTGCACTCTGTAAAAGGTTATGATCGTGTCTTGGTGAACAAGAGCTTAGAGAGTGACCCAGAGGTCTTGAGACAGAGAAGCAGTTCAAAGAATTTCTCCTTGCCATTCAAGATCTTACTGCAACATGAAGCAGAGTCAAGCCATGAAGGAAATAATCTGTTATTACTTGGTCAGGATTCTGTGACAGTTGCCATGGCAAGTGTACAGGAAGCTCTTAAAAAGTATCTAAAATCTGAAGAGGCagcaatgaaggagagaataaGGCAATATACTGAGCAACAACAGCAGAACTTTATGGCTTTGCAGTCCCAGGCGCTGAAGGATAAATCTTCTGTTTACAGGGTCATCAGTAAAGCCCAGGAAAAGACAATGGAGAGCTCCTTGCACGAAGCAATGTTTGAGACACCAGAGACAATTGGAGCAAACATCTTCCATTCACCAGGTCACGAAGGTCCCCTGAACCtactaaaaacaccaaaacatGTCAACCAAGTTCACATCACCCAAGTTAACACTGCTAGACCCTTATTTGAAGTTGGATCACCGTCATTGCAAAGTAACATTCATCGTGTCAGGAGGAAACCGCCCAGACCTGGACAGAAAAGCGCCAAGCCAGCGACAGCTGATGCTGACCCCTTGTTTGCACTGGACGGGTTTACAGATGACTGTGAACCGTTCTTTGAGTCAGAAGAGGATGAAATCAGTAGTAGTGACAACAGCTTCCAGAATGAAGAACCTGCCCTTCCCCGGCATATCTACATACAAAGAAAGAAACCTCAACCAGTTTCCCAATATTCCTCGTCAGTACCTATCTCCATGCCAACTATTGTGAGGAAACCCCACTCCTGGGAAGACGAGGAGGAGTTTGCAATGCCAGAACCAGACAAGATTGGGGAATCAATGAAAGCACTTGCACGAAGTGTCCAGAACAACACGGAGGACATGTTTGGAGAACTTCCACGCCCAAGACTGTTTACAGAGCCTCGGCTAACATCCTCTTACTTCTCAAGATAGCCCAGAGTCAATACCATGCACAAACAGACCGAAAACCATAGAAAGGCTTAGAAGAAAGATGGcaaaatttgttatttttcttaagGCTTATTTAAAGATACTAGTCTTGAGGgggatttgttttttttttttatgcaatCATTAGCACCCACAACTATATTGCTATGTACAGCATGGGATGAAAGTCAGAATTTCTATAGGTGGGTCCAGCGGGCCCTGGCCCTCCTTTCAGAGAGAAAATCCTTGGATTGAAAATAATTCCAGCCCTGCCTTCCTTAAAATCCTTGCATTGTCCACCACTTATTGGAATACCATGATCTGCCCCTGCACAGTCTTATGACTTCACAAAGGCTGAAGAGAAACCCTTGTTTATAAGGCATTGTTATGAGGCATGGGGGCCAAGAGCAATGGTTATAGTGTGGCATGCCTTCATTTGGACAAATTGTATACACTtcagttttgttttgtagTAATATTATTGAAAAGTTTTCATTCCTccatatatataaataatataaacaaaattaaattatATTGCTCAACATTTGAGCTAGAAATATGCAGATGGTTCTTGTTCACAAACTAGTGTTACTATTTATAGACATAGTACAGAAAGTGTGAGTGTtatatcaataaaaaatatttactttt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007465 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15798 all species →	PRAS	Proline-rich AKT1 substrate 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026682 all species →	Family	Proline-rich AKT1 substrate 1 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21844 all species →	AKT1 SUBSTRATE 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan
GO:0032007 all species →	Biological Process	negative regulation of TOR signaling	Interproscan
GO:0048011 all species →	Biological Process	neurotrophin TRK receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16184	AKT1S1, PRAS40; proline-rich AKT1 substrate 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032233015.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

16Conditions

61.5Max TPM

37.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	33.51	37.51
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	23.05	29.37
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	46.19	61.51
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	43.98	45.75
whole 6 week old aboral regenerate · regenerate uncut	3	3	24.88	29.61
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	40.49	48.13
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	33.46	38.62
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	42.69	53.79
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	40.95	48.71
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	47.53	57.70
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	40.11	41.49
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	43.01	56.39
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	37.14	39.78
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	28.66	48.54
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	32.20	33.50
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	37.95	43.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	37.51
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	34.01
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	29.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	29.37
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	21.56
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	18.23
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	61.51
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	48.13
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	28.93
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	45.75
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	43.47
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	42.72
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	29.61
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	24.86
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	20.18
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	48.13
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	40.30
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	33.05
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	38.62
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	31.44
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	30.32
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	53.79
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	44.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	30.30
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	48.71
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	42.58
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	31.56
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	57.70
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	44.31
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	40.57
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	41.49
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	39.68
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	39.15
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	56.39
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	36.40
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	36.26
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	39.78
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	36.87
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	34.76
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	48.54
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	37.44
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	33.50
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	33.36
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	29.75
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	43.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	41.52
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	29.32

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.