Gene detail

Detailed information of XP_032233091.2 in Nematostella vectensis

Genomic Location: NC_064045.1:9880825...9885599
NR annotation: XP_032233091.2, uncharacterized protein LOC5508449 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032377200.2

CCCGAAGCTATAAGCGGTGGAtctaaacaagatggcggccatgaatAGACCGAGATGCGACGGGTTCTCAGAATGAATGGCTTATAAACTAAGGCTCAATGTGGTTTGCCCCTCAAGAGATAAGAAGTTCCTTGTAATTGCTGATGAAGACTGGACTCTAGAAGATGTGAAATCCTGCACAGAAGTTATCTTCAGCAAGCTGTACCCAGAAGAGCCATCACTGACAGTCTCCAAGCTGCAAAATGAGTTCCACTTTGACCTACCCCTGGACTACTGTGCAGGAGATGCGTTGGTCGACTCTGGGCTAGTGTTTGCCATAGAGGATGAAGTGCCTGTTACACCAAGGAATATTGCTGTATCCACTGCAACTCAGAAGCCTGAAAATCTCCTAAATAAGCCAAAAAGGCttaaaaagaaacacaaaCCTCGCAGGAAGAaatttttggcaaaaaaaaaggggaaatCAAGATGCATGTCCAGTGATAAAGTCACCTCCACAACAGGTCCCACTGCCTCACAAGCGCAACCTGATGTCCATCAAGATTGTAATTTATTACCTCAAGTTGTTCAGAGAATTTCCAGTGAAGACATTGAAGTTGACATAGAGACCATAGAGGAGGAACCTGCCCATGATGTAGACGTTATCAATTGATGTATGCAGTCATCAAATATCAAAAGTATAGATCAGTGGAAGTGGCCTACAAGGTCTGTCATGAAACTGAGCTGACCACTGACATGATGACAAAGCTAGCTTGGTTTACTATAAGATAGGTGCATCACATCAGGTTAAAATGATTTCACATCCCTTACCCGTTTTTGATAGATTAACAGAAAGTGATTCTTCTCTTATAATATTACTTATTACATAGCTTCAAACTAAAACAATTGTAAATTTGgtgttgtttttattggtatgacaatttttaaaaaaagtactCGGGAGTTTGGTCTTGTTTTTtcccctatttttttttttcaattatttgaaaaatgaTTTAGATTTCTTCCAACAACTCCCAACAATTCATTTTAGCTCAACAGAGGATTTCActaaaattaacaaaaaaaaatgtgttttttttttttgcgtgccGTTTAACGAACCAGCGAACCGTCAGCACgagcaggggggggggctactTTTCTGATCGGATGTTTCTTTTAAtatgaacgtttttttaaCCAACGGGTACATATGCaaccaacaacaaatttgttgaacagtttaaaatacCGTCCATAAAAACCTAGGTTATCCCCTGCATTCTTATAAATAGCGCATAAGAATTTGAAAacacacccacccctcccccctgaacaacataccacccctcccctaaaaccactacccaccccttcACCCCAACTTTCGTCCCCCACTTATGGGACCACTCCATCGTCCCTGTACTATTTcttttgcgcaaaaaaaaaaaaaaaaatgtaaccaAATCACACAAGCAAAGGTCGAAGACTAAACTATGAAGAAATCGACCCTTTTAAAAATGTGTCATACGAACACGGTTTCGTTGCATGCGTGCCGCGTGAGCTCCGCGTGTTTGTGGCTTGCGTGCAATTCACTGTATGTCAGGAATGCGGACTTCAAACGTTACTTTTTTAGGTAAACATGGTATCCCACAGCGCAATGCGTGCTCGATGTGTATTGTCATGATAGCTCATTTACATACGCTACCCGCCCAAGTGCCGTACTCCTAACCGCTGTATCTCGATGGTAAACAAACACTTCAGAAATCGACAAACGCTCCAGTTATCGGTGATCAAACGTTCGAATTGGTTTACTGGATTGACGCAAGCTCGCAGGATAACCTATATGAGCCGCTTATATTCGTGAGTCGCGCATTCTATCGCATTTACTCAAGGACTAGCGCCTCGGGTTTAGGGTGTTGACAATCGGCACATGGTCTTTTCATGCTAAACTTCCAATAACAAACAATCAGAATAGCGGAGTTCCATTCGCGTTTATTACTTAACGGTGTAGGTCCGATTTCAAGATGGAATTACCGTGGGTGGAAGCTGTTTTTgtgctttttcttttaaccaGGAGGGCAGCCGTCGTTTCTTTGGACCCAGGACTTCTGGAAGACCAAACATTGACAGACACTCACTACTGTCCTTACTTCAAAAACCGTGGCCCATCGCGACAAGATAATTTGCGGAATTGTACGTGGTATACAGAGAATTCTTGTTGTCATGACTCTGAAATCGAGTTTGCGTTCGCACAGCTTACACCGATTCCGAAAGCTGGCGAATCATGTGTAAAACAGCTCAATTATCTCTACTGCTATATCTGCGCGCCGAACCAAAACACGTTCTTTCGTCGCTCCACTCTTACTGTCTGCGAGGAATTCTGCAATCGTATTTATAGTGCTTGCAAAAAGGCGTACTTGAAGGGTATGATGATAGGCGATATGTACTCAAATGGGAGGGAGTTCTGCGAAGGTAGAAGATTTGAGGTTTCCGATAAGAATTCAAAACAGGGTTGTTTTGATTTCGACCCCGACGCAAGGAAGTCAACGAGTGGAAGTTCTAGAACAGCTGATCGTCGGCCTCTTCTCTTTGTACTATTACTTATGATATGCCGGATTGCGAGCTAAAAGTGGTTGAGATCTCGAAGTTGAGCCGAGATTCTTTGTCAGTGCcgttgt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010817 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10407 all species →	Cytokin_check_N	Cdc14 phosphatase binding protein N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018844 all species →	Domain	Nucleolar protein Dnt1-like, N-terminal	Interproscan

PANTHER

No PANTHER signature was detected for XP_032233091.2. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for XP_032233091.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032233091.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032233091.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

18.9Max TPM

9.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.96	14.19
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	11.04	13.72
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	10.90	11.38
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.91	9.65
whole 6 week old aboral regenerate · regenerate uncut	3	3	9.70	9.86
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.72	14.32
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	9.09	13.67
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	12.01	12.86
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	12.08	17.77
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	5.43	8.27
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.03	8.22
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	14.96	18.85
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	12.01	12.92
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	8.29	13.05
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	11.68	14.12
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.79	8.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.19
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.98
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.73
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.72
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.20
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.20
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.38
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.83
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.50
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.65
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.71
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.37
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.86
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.72
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.52
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	14.32
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.85
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.67
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.58
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.86
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.26
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.90
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	17.77
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.46
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.02
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.27
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.02
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.22
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.07
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.79
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.85
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.92
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	12.11
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.92
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.09
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.03
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.05
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	11.83
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.12
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.18
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.73
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.36
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.