Genomic Location: NC_064045.1:9962869...9970945
NR annotation: XP_032233103.2, G protein-activated inward rectifier potassium channel 3 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5508473 |
| Transcript |
| rna-XM_032377212.2 |
| Protein |
| XP_032233103.2 |
| UniProt accession | Description |
|---|---|
| P49656 | Inward rectifier potassium channel 2 OS=Oryctolagus cuniculus OX=9986 GN=KCNJ2 PE=2 SV=1 |
| O19182 | Inward rectifier potassium channel 2 OS=Bos taurus OX=9913 GN=KCNJ2 PE=2 SV=1 |
| Q9MYY9 | Inward rectifier potassium channel 2 OS=Canis lupus familiaris OX=9615 GN=KCNJ2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001013 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17655 all species → | IRK_C | Inward rectifier potassium channel C-terminal domain | Domain | Interproscan |
| PF01007 all species → | IRK | Inward rectifier potassium channel transmembrane domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013518 all species → | Homologous_superfamily | Potassium channel, inwardly rectifying, Kir, cytoplasmic | Interproscan |
| IPR016449 all species → | Family | Potassium channel, inwardly rectifying, Kir | Interproscan |
| IPR041647 all species → | Domain | Inward rectifier potassium channel, C-terminal | Interproscan |
| IPR040445 all species → | Domain | Potassium channel, inwardly rectifying, transmembrane domain | Interproscan |
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11767 all species → | INWARD RECTIFIER POTASSIUM CHANNEL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005242 all species → | Molecular Function | inward rectifier potassium channel activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006813 all species → | Biological Process | potassium ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0034765 all species → | Biological Process | regulation of monoatomic ion transmembrane transport | Interproscan |
| GO:1990573 all species → | Biological Process | potassium ion import across plasma membrane | Interproscan |
XP_032233103.2.Transcript abundance of XP_032233103.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
