Genomic Location: NC_064044.1:9118939...9122053
NR annotation: XP_032233337.2, asparagine synthetase [glutamine-hydrolyzing] [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC116615641 |
| Transcript |
| rna-XM_032377446.2 |
| Protein |
| XP_032233337.2 |
| UniProt accession | Description |
|---|---|
| Q1LZA3 | Asparagine synthetase [glutamine-hydrolyzing] OS=Bos taurus OX=9913 GN=ASNS PE=2 SV=3 |
| P08243 | Asparagine synthetase [glutamine-hydrolyzing] OS=Homo sapiens OX=9606 GN=ASNS PE=1 SV=4 |
| Q5R6W9 | Asparagine synthetase [glutamine-hydrolyzing] OS=Pongo abelii OX=9601 GN=ASNS PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003759 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13537 all species → | GATase_7 | Glutamine amidotransferase domain | Domain | Interproscan |
| PF00733 all species → | Asn_synthase | Asparagine synthase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006426 all species → | Family | Asparagine synthase, glutamine-hydrolyzing | Interproscan |
| IPR017932 all species → | Domain | Glutamine amidotransferase type 2 domain | Interproscan |
| IPR001962 all species → | Domain | Asparagine synthase | Interproscan |
| IPR029055 all species → | Homologous_superfamily | Nucleophile aminohydrolases, N-terminal | Interproscan |
| IPR033738 all species → | Domain | Asparagine synthase, N-terminal domain | Interproscan |
| IPR050795 all species → | Family | Asparagine Synthetase | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11772 all species → | ASPARAGINE SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004066 all species → | Molecular Function | asparagine synthase (glutamine-hydrolyzing) activity | Interproscan |
| GO:0006529 all species → | Biological Process | asparagine biosynthetic process | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01953 | asnB, ASNS; asparagine synthase (glutamine-hydrolysing) | EC:6.3.5.4 | Peptidases and inhibitors | ko01002 | deepkoala |
Transcript abundance of XP_032233337.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 1 | 0.03 | 0.10 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 1 | 0.05 | 0.16 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 1 | 0.01 | 0.03 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 1 | 0.01 | 0.04 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
