Genomic Location: NC_064035.1:18032111...18052697
NR annotation: XP_032233458.2, F-box only protein 11 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5508768 |
| Transcript |
| rna-XM_032377567.2 |
| Protein |
| XP_032233458.2 |
| UniProt accession | Description |
|---|---|
| Q7TSL3 | F-box only protein 11 OS=Rattus norvegicus OX=10116 GN=Fbxo11 PE=2 SV=1 |
| Q86XK2 | F-box only protein 11 OS=Homo sapiens OX=9606 GN=FBXO11 PE=1 SV=3 |
| Q7TPD1 | F-box only protein 11 OS=Mus musculus OX=10090 GN=Fbxo11 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003937 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|F-box · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 activity|UBR-box · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02207 all species → | zf-UBR | Putative zinc finger in N-recognin (UBR box) | Family | Interproscan |
| PF13229 all species → | Beta_helix | Right handed beta helix region | Repeat | Interproscan |
| PF12937 all species → | F-box-like | F-box-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012334 all species → | Homologous_superfamily | Pectin lyase fold | Interproscan |
| IPR022441 all species → | Repeat | Parallel beta-helix repeat-2 | Interproscan |
| IPR011050 all species → | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR003126 all species → | Domain | Zinc finger, UBR-type | Interproscan |
| IPR006633 all species → | Domain | Carbohydrate-binding/sugar hydrolysis domain | Interproscan |
| IPR051550 all species → | Family | SCF Complex Subunits and Alginate Epimerases | Interproscan |
| IPR006626 all species → | Repeat | Parallel beta-helix repeat | Interproscan |
| IPR001810 all species → | Domain | F-box domain | Interproscan |
| IPR047504 all species → | Domain | F-box only protein 11, UBR-box | Interproscan |
| IPR036047 all species → | Homologous_superfamily | F-box-like domain superfamily | Interproscan |
| IPR039448 all species → | Domain | Right handed beta helix domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22990 all species → | F-BOX ONLY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0042981 all species → | Biological Process | regulation of apoptotic process | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10297 | FBXO11; F-box protein 11 | - | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of XP_032233458.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
