Gene detail

Detailed information of XP_032233559.2 in Nematostella vectensis

Genomic Location: NC_064037.1:12532652...12547285
NR annotation: XP_001629437.3, acetoacetyl-CoA synthetase isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032377668.2

AACGGTTAATAATTACTTACGTAGCCTGTGTTGTACCTATTTGATCGGCCTTAAATATCAAATTACCGTAAGAACTGATTACCTAATAGGACAAACGTGAGATAACTGTGACAAATAAATCAAGACTAGAAGCCTTTCTAGAGACCCGCCAACGTTGAATCTTATGAGCAGCTGCGGTTATGGAGTGTAGATCACTATGCTGAGTTTTGGGAAATGTTCTGGACCTTTtctggaattattcactcccAGACATATGATGAAGTAATAGACACAACGAAAAGAATAGATGAAATTCCTGAATGGTTCCACGGTGCAAGAATGAACTATGCAGAAAACTTGCTACAAGGCAAAGATGAAGACATAGCCTTATACACAGCAGGAGAAAACCAAGAAGTAAGAACAGTGACATTTCAGCAGCTTCGTGAGAAAGTTGCAGTTTTGGCATCAGCTCTAGGGAAACTTGGCATCAAAATGGGAGACAGAGTTGTTGGTTACATTCCAAACTGTGCTCTTGCTGTTGAGGCAATGCTTGCGGCAAGCAGTATAGGTGCAATATGGAGTTCCACCTCACCTGATTTTGGTGTCTCTGGTGTACTGGATCGTTTTTCACAGATTCAGCCAAAAGTCATGTTTTCTGTCAATGCTGTCCGTTATAATGGAAAGATTCATGACCATATGGCAAAACTGGATGGTGTTGTTCAAGGTCTTCCAGGGCTTGAAAAAGTAGTCATTCTCCCATTTGTTGGCacagaagagaaaatagaaaTCAGCCAAATTAAGAATAGtatttttttgtCAGACCTGCTCAAGTTAGCAGATGATAGGCCAGAGCTTGAGTTTAAGCAGCTTCCATTCAACCACCCATTGTTTATTATGTATTCCTCTGGTACTACCGGTCCACCCAAATGCATGGTTCACTCTGCAGGGGGTACTCTGCTTCAGCACCTGAAAGAACACAAGCTCCATGGCAACATGGGAAAAACAGACATTATAATGTACTACACTACGACAGGTTGGATGATGTGGAACTGGTTGGTCAGTGCGCTTGCGGTTGGTGCAGCATTAGTACTTTATGACGGCTCCCCATTCATTCCCTCCCCCTATGTGATTTGGGACCTTGTTGATGAAATAGGGATCACAATTCTTGGGACAGGAGCTAGATGGCTTCAAGCACTAGAAGACAAGCATATCTACCCAAAGGATAGCAATCGGCTGACAAGTTTACATACTATTTTGTCGACTGGCTCCCCACTCAAGCCTGCAAGCTTTGATTATGTTTACAAGCACATCAAGAGTGACCTTCTTCTTGGCTCAATCACTGGTGGTACAGACATCATTTCTTTGTTTGCCGGACACAATACTGGACTTCCTGTGTACCGTGGAGAGATCCAGGCAAGGAGCTTGGGTATGGCCGTAGAGAGCTGGAACGAGGAAGGTGTGTCTGTGTACGATAGTAGTGGGGAGCTCATCTGTACCAAGCCCTTCCCTTGTATGCCAACACATTTCTGGAATGACCCCAATGGGAGCAAGTACAGGAAGgcttattttacaaaattcaaAGGAGTATGGGCACATGGAGACTTCTGCAAAATCACCTCTAGAACAGGGGGAATAGTTATGCTTGGTCGAAGTGATGGAACTCTGAATCCAAACGGAGTTCGTTTTGGTAGTGCGGAAATCTACAACATAGttgAAAAGTTCCCTGAGGTTGAAGACAGCTTATGTGTCGGTCAGCAAACGGACGATGGCGAGAGAGTGGTACTGTTTATCAAGATGGCCAATGGATGCAAGTTTAATGAAGAAATTGTCGAAAGAGCGCGAAAACAGATACGAATCAAACTATCTGCCCGACATATACCAGCGGTGATACTGGAAACGCGAGAGATCCCGTATACTGCGAGCGGTAAAAAGGTGGAGGTGGCCGTGAAACGTATTCTGGCGGGAGAAATTATCACCAACCGAGGAGCCCTTGCTAACCCTGACTCACTAGACCTATACCAAGACTTGCCTCAACTCAAGACGTCCTAGAACACACGACAAACTCTGTCTACACTGAACACATTCAATTGACTGCAAATCATATGCATACATGGCCTATTTCAAATGTGTCGTAGCCCggagtgcttcatgggtatcaaaaaataagtgaaaatagaaacaaaatcCAGGTTTAGAGAGCGTTAGCACTCGTTCTGGGGGCATATAAacacgggggtgatcgtcagCAAAATCAGTTTTAACCCTAACCGATAGCACTTTGGatgtggtcaacagcaatcCTTATACTCCTAAAAGATGGCACATTGAGTGTGGTCTAagcaatttttaaccctataagggatagcagttggtagattttttttatatcatagAAGATAGGACGATCACCCCGTCTACTTACTTTTATGGAGAGTCCCCCTTTTCGATGAGTCAATCAATTATAcattacccatgaaccactacATTGATTATCGTGTGCataccttatttgaaataggtgctTATATCCTGAACATATGAGGTATATAATTTTATCGGCTTTTGCTCACGATTTAGCAACACAGAAAGAATATAAGCTAGAAATTATGAAATAATGAagggaaataataataaggcagCCAAGGAGACCGTTGTTTGTATATTTAGCTCCATGGCTAAAATTCAACGAACGTTTTGTGACACACAATAAAGACAATAGCAGGCGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLG0	Acetoacetyl-CoA synthetase OS=Gallus gallus OX=9031 GN=AACS PE=2 SV=1
Q9D2R0	Acetoacetyl-CoA synthetase OS=Mus musculus OX=10090 GN=Aacs PE=1 SV=1
Q9JMI1	Acetoacetyl-CoA synthetase OS=Rattus norvegicus OX=10116 GN=Aacs PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR005914 all species →	Family	Acetoacetyl-CoA synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42921 all species →	ACETOACETYL-COA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030729 all species →	Molecular Function	acetoacetate-CoA ligase activity	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01907	AACS, acsA; acetoacetyl-CoA synthetase	EC:6.2.1.16	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032233559.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

11.9Max TPM

6.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	8.19	11.95
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.40	8.77
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.54	8.09
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.44	8.46
whole 6 week old aboral regenerate · regenerate uncut	3	3	5.88	7.12
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	3.39	6.07
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	8.86	11.53
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.19	8.92
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	5.29	8.51
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	6.69	9.29
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.40	8.13
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	5.08	8.24
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	6.84	8.17
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.63	7.89
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	4.66	7.15
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.82	8.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.95
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.01
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.62
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.77
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.35
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.07
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.09
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.61
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.92
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.46
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.95
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.92
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.12
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.44
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.09
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	6.07
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.10
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.53
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.87
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.19
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.92
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.37
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.30
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.51
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.35
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.29
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.86
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.91
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.13
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.50
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.56
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.24
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.00
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.17
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.30
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.04
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.89
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.15
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.82
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.46
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.