Gene detail

Detailed information of XP_032233619.1 in Nematostella vectensis

Genomic Location: NC_064035.1:4901539...4908132
NR annotation: XP_032233619.1, hemicentin-2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032377728.2

CCATTATTATCCATTATAAAAAGTTGAGATCCCCAATACAATATCTGCACTCAACTCCACCGCGGCTTATTTCTATCCATGGCTCATAACACTCGGCTATGATGTACCCTCTCACGTGAACGATTCGATGTTCCATCACAGGAGGGACTTGTTAATACGAAAACATAATTGGACATATAACACAACAGAACTGGTTGGTTTAATATTGCCATCCAAAGATAATTATgcggaaaaaaaacttatcTATTTATCAGTTCAGTGTAGCACACAGACTGTGGTAGTAATAGTTAAATCTGGCAGTTTTGTGGAATGAGAAAGTTGTGCTTTTGGTTATAATGATGACCTCGAGGTGTATCCTTATGGTCCAACATATGGCCAAAGCCTGAGCCGATCATGACGCAAGCTGGCTCGAGACTCAAGCAAAAGAGTATTTTGGGGCGTCAATCAAGATTTAGGCGCtaaacatcaaatattatattttggtcTTGCTCCATGTTTGTTCAAGGCCGCCATGATCTTCACATGTCGAACCAGGCAGGGTTATTACATGTTAAATCGAAGGGGATTTCCCTGTAGAGTAAATTCCGTTTTCGCTGTAAAAGTGGTCAGTGCGCTTCTCGCGGTAATTGGCGGTGTGAAGGGTGAACCAGCAACCGTACCATGTGCAGTGGCCCCCTTGCCGAGTAACAAATCAGAGAACAGCGTTATCCTAGATGTGAATGGCAACAGCTCGCTGATTTGCCCCCTTGCATATGCTTATAATGTCACTGAGATTCGCTGGATGAAGGACGGCAAGTTATTAGACCCTAGAAGACGATCAACCGAGTACCGTGACTACGCTGTGCTGAGAGATGGGAACACATCCATTCTTATGTTAAGGAACGTTTCCACGCGCCATACCGGAGGGTACCGCTGTATCACCAGCCGAGCAGGAAAACATCCCTTATCGTTCACTCAATGCTTCCTCAATGTTACGCTAAGCGAGCGTCCACGAATTCTTCGCAAGCCGTTGCACCTTTTTACTCCACCCTTACAAATCCTAACCCGAGACCAACCTCAGACGTTCCACTGTTACGCGGATGGGCAACCCGCACCTCGCTTAGCATGGCTGAAGGATGATCACGTGATCGGTGAGAACCAGAAGGGATACAGACTGGCGAAAAGAGCGCGAGGACTGGATCTGACAATAATGTTAGCCCAGGCAAACAGCGGCGGCAACTACACGTGCCTCGCGGTGAACAGACTGGGCCGAGCTGAATACCATATATGGGCGGTGTTATCAGAGCATATTTCCCCTGAAAAGCCGGAAGTGACAGCAGAGCTACCTGTGGTCCTCGTTAGGTTTGGTCACCCAGCTAATCTAACTTGTCGCAGTACGCATGCGCCTAAGGTTTACACTATTTCGTACTGGATGTACGGAGGCAAAGTGGTGGAGAACATGGGAGATGAGTACAGCATCACCCGTACCTGGGGCAAGGGCAAAGGCGCTAACAGCTTGATGTTGAACTTGCAAGTCAGGAATGTGACGGAGGAAACCGCTGGGAATTACTCGTGCATAGTGCAGACGCATATAGGGCCAGGAAGCGCAGACACAAGACTAGTGATAGACCTCGATAGACCAGGAGTTTCAAAGATGGTTTCAAAAGCACACACCCTCGACCAGAGGATGATCGTTATCATGATATGTATAGTGACGGGAGCTCTAATAGGGATGGCAACTGCCATGATGGCGAGATACCTCCGAAAGAGACGGACAGACAAGTTGATGCGAAATATCAGTAATCAGTTGGAATTTCATTACGACGTGTTCATAACGTACAGCGGTAAGGACTACCGCTGGGTCCGCGACGAGCTGATACCGGTACTGGAGGCAAACGACATACGCTACAGCATTCACTGTAGAGACTTTGAGATCGGCAAGGCCATCTTAGATAACATGGCAGAGTTTATCTACAAGAGTCGTAAGATCATAGCTGTTATGTCTACGAACTACATGTCTAGTCGGTTCTGCCGAGGTGAACTAGAGATGGCACTGTATCGCAGCACCGAGATGTCAGATACATCGCTTATACTCATTCGGATCGACAGTGTTAGTAAGCGAAAACTACCTAAGTCCATACGAAATAGGACGTTCCTCGACTACTATGATAGAAATGAACGAAAGGGATGGAAGCAGAGGCTAGTGAAACACATACAGAGCCCTGTGTTTTATATGAACAGCGATTCCACATCAGATGATCTTCAAAGCTCGGCTCCtatcctaggaaacgctgaGTGTTAGACAAAAACTGTCGATCTGTCGATTTCCAAATGGCAGcaagccgccattttgccaTCCCAGCAAATTACCAATTGTGTGAAAGCATTCATTCCCTTGTCTtcttccccccctcccccccaccaccaccacccagaTTTTATCTCAAGATTTGCCTTCCAATACTGaagaataaacaataacaaaggtgacGCCAAAGTTGGCTTATGAATTAAGGTTATCAGCACAATAACGCCCTGAAATCTGGCTAATTTTCAGAAGGCAGTTCACGTCTGTATGCCGTGATCTTTCAGTTAAGAGGCTTGGCATTGTGACTGGTCAGCTATATTTCGCTCTAATTTCCGTACACTGTATAGATATTACTCATCAAATAGTGCGCACTACACAGATTATCCATCAAACAGTGCACACTGCACATTAGTCAATAgcattcccagaaataagagacaacATGGCCGCGTCACATGCGTAATAGTGctacaatgtcaaaatggctgccatttattataaggaaatgtggggagacatcacaatttatcaaattttctcgtttcagagattttgggctcacgatgcaggactcgaaaaaaaaaaaaaccttgccaTTCGAGTGATACACTTTCCGTTCAAACGATGCCAGAGAAAGCCCTATAATTGTTCCTTGGACATTGCACTTTTGTTCGCTTGAGAGCATACAACCctccatacattctctgtaatttcattgaaatcggGCATAAAAGAAGTCGTTTAAGAGATAGAACTGTTCGCCGCATCACAggtgcaggactcgaaattggtaaatcgactatccttccatcaaattggccaataaaataggcagtagcgccttccaatcttgttcccgaagaaataacatttgatgtagttatgcctagttcaggaaccattattgttgtctttaagatACAGACTGAAGCAAGAAAAAAGGGTGCGCTCCGCAAGAACAACTTCTCTCCGTCCGTTAAACGGCCCCACGGCTTTCTGGGATAGACACAGGGGAACCATAAAGCCTttctaaaatacttttttttaaattgcgCATATGTGTTTTCCAACCTCAGCAAGACTGCCGCACTTCCATTATCATTGGACGTATCAAATCAGAGATGCTCCTTGCACGTTTAAATACCGCTAATACTACTTTAATTTGGAATTTTAGTCAACCTGATTAAAAACTTCTAGTGTAACAACAAAAGGGAAGCCCCTGTGCTGGCCGGAATCtcgtttttatttgtgataccgctgttattcctcgcgggcctagcaaaatgtgagcccagagaaaccgctggctaatgtcccttatttctgggaatggACAGTGCGCAATGTACAGAGATTTACTCAACAGACAGTCCGCACTGTTCAGGTAATTACGTGGTCAACATAGTTTTATGCTCTATGGGAAATTATTCTTAGAAACACAATTTGGGAACCTAGCCCTCTCCCAACAAACAAAAGCTTGCGTTTCCTTCCATTAGTTTAATAATTTGGACAGCACATATCGGCTTTCTTTTTGCGAACATGATTTTCGACTATAGCCCTTCAAAATTACGTGCTAATCTGTAgaaccaagagaccatgatataagagaacgaatccccgtggcccatgatgcCGTCCATgcaagctatttttagattgcgcgagcttgtcaatcatagcatccatatatggttcatcgcgccatatttggttatgggcacctcACGAGCTAGTAcattttcacaattttttCCGTCTGCACTTCTtgacttcgttcgctacctgtttttatccttttagctgcttcTCATAGCTCATGATTACAATGCTACTTGTA

Protein

Uniprot

Uniprot term	Description
Q0ZUL9	Toll-like receptor 6 OS=Dasypus novemcinctus OX=9361 GN=TLR6 PE=2 SV=1
Q704V6	Toll-like receptor 6 OS=Bos taurus OX=9913 GN=TLR6 PE=2 SV=1
Q15399	Toll-like receptor 1 OS=Homo sapiens OX=9606 GN=TLR1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676	TIR_2	TIR domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00047	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR015621	Family	Interleukin-1 receptor family	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11890	INTERLEUKIN-1 RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan