Gene detail

Detailed information of XP_032233702.1 in Nematostella vectensis

Genomic Location: NC_064037.1:16804686...16812288
NR annotation: XP_001629500.1, probable E3 ubiquitin-protein ligase RNF144A-A [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032377811.2

TACGCACTTTAGTAGGTGGCACGATATATAGCCGGTAGCATTCAATAATTGCATCCAATACATAAATGAAATGCTCGTCAAAAGAGTCTTACTTCATAAGACTCAGGAAGAATCAACGGAAAGAGGAATGTGAGAATAACACACTGCACTATAAAGCTATCGACATATACTACTGTAAAAACAAGTCCAGGAAGCAACAGACATGGCCCCGGCAGTAACCAAAACTGTAGTCCAAGAAGGGAGTCTTCGACACCGGCCAAAAACTCTATACTGTAAGATCTGCCTGGCCGACTGTCCAACCAAGAAAGGAGCAATACTTAAATCATGTGGCTGTTTCTTCTGTAAAGAGTGCCTCAAACAGTACGTAGCCCATGCCATAGCAGACGGCAGTGTGTTACAGATACCCTGTCCCGATGGCGTGTGCCCTGATAAGGGGGACTTGATGGAAAGCGAGATTGCAGACTTGATCGCTGAAGATTTATTTCAGAATTTTCAAAAAATGCGGGCCATTAAAGAAATTCAGATAAGTAAATCAAAAGCTTTCTGTCCTAAGCCTGACTGCAAAGGTGTCGTGGAGAGTATTCCGGGGGCTGCTAAAGAAGTCTGCTGTTCTGAGTGTGGCTATTCCTTCTGCTTTGCATGCAAAGGTCCTTGGCACCCAGAGAAACATTGCCAAAATAAAGGAGAAAAAGCAAATGGAATAAAGTTTTTTGAGCTTGTAAATGGCGAGGAAGTCTTGGTGGAGATCAAAGCTTGTCCAACTTGTCAAGTTTTAATTCAGCGTGATGAGGGGTGTGCACAGATGATGTGTGGAAACTGCAAACACATCTTCTGCTGGCACTGTCTCAAGGGGCTTGATAGTGACATTCTACTGCGCCATTATGACAAAGGACCCTGTCGTGATAAGTTGGGACACTCACGGACAACACTGCTCTTGCATAGGACTCAGGTTGTTGCAGGTTTTGTCTTCTTTGGAGCCATGATTGTCATTGCTTCACCAttccttctggtcatttcacCATGCTTCTTGCTGTCAAAGTGTCTATTTCGCAACAAGAAAGAGAAGTCCCAGTAGATGCAGTATTACCATACAACAGTATTACCATACAACAGTATTACCATACAACAGTATTACCATACAACAGTATTACCATTAGAGTTTTCATAGATACATACAATAACAACACTCACAGGTTAAGAGAATGAAAAATGAATTACATTTGGAGCTTATAATCCAAAATGGATGAATTACAAATGACAGAAGTGAATAGTGAATCCACTTTTAAAACTCTCCTGAAGAGTATTTTTTAATAGGTTTCAAtgctataaaaacaaaattttgtgtctttgaAACAATGAATTTTAGTATTGAGTGCAGCGACTGAATAGTTGCAATGTTCCCCTGCATTAAGTTTTCAGTTGATCTGGACAATTTGGAGGCTGCTGGACAGCTTCCTAAAAAACTTTGGAATGCAGGAAAAGATTGCAATGTCAGAAATCATCGAGGCATTTACTACATTACCACACAACTACTAGTAATTAGATTACAAAACTATTTTATAAACAAAAGAGAATATCACTTCTCCTAGCAATAAGACAATACTAGGTAACATCAAAATACATTATCATTTTGAGTGTTGGACATGTTAGATACTTCAGTTGATCTGAAATATCACACTTGAGTGTTAACATTCCTTCAGTGCAGTTATTTTGCATTGATAATACATCGTAAAGCTACATTTTTCATCATATAGCTTGATAGATTAGAAATTGCGAAAGTGATTGAGCAATTTCATTGTTTGATAAATTAGGCTATGTAAAATTCAGTTGCTCATAATACCACCACTCTAAGCAGCTTTGTGACAGAAGGTCAAGAGGACCAGATATTGCTGCCTTGTTTGTTTCAGTTGATCTGAAATTTCCCAACTCTGGTTGCTGGACAATCAGTGTCAAGGCATTTGTGGCAAGCATTAAGGTCTGTGAACAGAGTAAGGAAGTCAAtccttcataaaaaaaaaaacaccaaaccTGATTTTGAGGTTTACACCCACCTGCAACCAACTCTAGTAATCATTTAGCTATATTACTCAGTGTTTGAGTTAAATAATGCcatgtagtttttttttattacttgacAGGGCTCTAGAAGAGGCTGGGTCAACGGGGGTGTGCCctcatatttaaaaaattagGGAATGATCAGTAGGGTGTGGCTGTGCACCCCAGTCTGTAtcatgccccccctccccacccacccccacaAAAAATGGAGGTCTGCTACAGCCCTGATTGGTTTAGTAGTAATAAAAAAGTTGTCCTGACTGTAATTACAAAACATTAGTAAAGTATATATAGATGAAAGCATAGCTCAAATGCATTGGCAGGTCAAAGATGGTTTGTCGGTAATAGAATTCAGTTGATCTGAAATCTGTTTGCAATTACTGCTGGACAGTACTTGCAGTAAAACGATGCAGCTTTTTCTGCCTTTGTGTGAGCTGTCTCAACATTGTAGAGAAGAATTGAATGCAAAATTTGCAGGTTTTGTATTAGCTTGAGTGTCATACACTTTTTtcttagaaaataaaatataaattctTAGTAAGTATCTTTTAACCATGTAGAAGTCTTCAATTACTTATTAGTCTCCTTCGCAGCCCCCAGCAGTCAGTCACACAGCGCTTGACACCGACCGCTGGGGGCTGCGGAGACTAATTACTTATGTGTGATATTCAAAAGGCAGGGCCCCTATAATAAAGCATTTGGATTTCTTGCTTGTTATGTTTAGAAGGGCAATATTTCCAACAAATTAAATACTGTTCACTTGGATAGCTTATTATGCATTATCATAAGGCAGGCCTGCAGCCAGAATCAAAATTTCACCAAAGCAAAGCTAGCCACTGTAtaataaatcaaacaaaagcAGGTTTTTTATCTCATACTTTTCAAatgtgaaacactaaacatcaaaattttagtAAGGCAAGTGCCTCACTTGCCTCACGCTGGCTACAGCCCTGTAAGGAATAACTAAATGCcttttttgttgcttttttttaatataaattGTTGAACAATTTTCAATTGAACTGTAAAACAGTACTATGTTAGGCTTTCTAAATAAACTTTGTCATAAAAACA

Protein

Uniprot

Gene family

Uniprot term	Description
Q5RFV4	Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio OX=7955 GN=rnf144aa PE=3 SV=1
A4IIY1	Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis OX=8364 GN=rnf144a PE=2 SV=1
Q7Z419	E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens OX=9606 GN=RNF144B PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR031127	Family	E3 ubiquitin ligase RBR family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11975	RNF144; E3 ubiquitin-protein ligase RNF144	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala