Gene detail

Detailed information of XP_032233744.2 in Nematostella vectensis

Genomic Location: NC_064036.1:19151706...19168161
NR annotation: XP_032233744.2, dynein axonemal assembly factor 3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032377853.2

aatctgcgcatgcgcgtttGTTTgaaccaagatggcggacgatgTGATGGTCTGTTGTTGTTAATTTTGAGACGTCTGTTTTGGAAATAGTTCAATATGGTGGATGCGTTTGGAGCTATAACGTGGTGGGGATTCAGCCCTGCTTTAGACCTACAGGAGATTTGTTTCAgttTGTCATCCAAGTTTGAGAATTTGAAATTATCTGGTGAAGGTCAGGAGAAGCCATTAAATGTTTTGATGATTGGTGCAGGAGATTGCAGACATATCTTAAAGACCTTATCACATGCCAAAAGATGGCCAAAGAGGAAAATCAATATTTATGTTGTAGAAAACAACCTGGAGGTACTTGCCCGTCATCTTCTGCTACTCTCAATTGCTCTGGAACCACAAGTGAGCCTTGGGCTGCAAGAAAAGACCGAACTGTTTCTAGAGCTATTTGGCAACAGCCTGATTCGCCCCCAGGCTAGTGAGTACCTTCAGCGTACCAGCAATGACTTTATAAGGATGGTAACTGATTTTGACTACCTTGAGGACAAGCTACCTATATTTGACATCACCCAGCTAAAGTTCAAGGAACGAGATTTACTAGAGGGGATTTTTAAATTCTGGAGAAACTCTGACCCCAAGTTCTTTGACATCTGTAAGTTCTGGGAATCAAGACAAAGGCAATACCTTGGGGTGCGCTATGATGCTCGTCAGAATGTCTATGACTGGGACATTACCATGaaattacaaaagaagGCGTCCATCGTGCACCAACACGAGTACAAGGAATGGAGAGAGCATGGGGTTGCCTTCGAGATTCGCAAGGACTCGGCTTATGAGATATCCAATAGAACATTGGCTTCTGGACTTCTGCTGAAGAAGGAGGGACAGCGTATCCCTTGCCGTGGTTACTGGGGTGACATCGTCAACAGCCCGTATGTGAGCTTTGGCATCGAGAGTGAGGAGACCTCCCTCTTCAAGATGAACAACGGACAGCATGTAAAAATGGCAGGAGACGTGTCTGAGTTCAACATTACCGCCATGATGCATGAGCTGGTGTCAGGGGAGAAGTACAAGCTGCCTGACGACACGGCTAAACCTGACAAGCAGCAGAGGCAGAAGGCTACTATTCAAGATGTCatagaggaggaggaggaggaacaGGAGGGAAAGGAAGACAAGGACACGACGTCAACAGGGAAACCGCCACAGGAATCCTCCGAGTACATGAAGCTCGATGGAGTAAAAATCTGCTTTCTTCCACTCAATTGCGTGCCGGACCTCTCAAGGAAAAGCAAGTACATTAAACTCTTCAATTGTGTCTACTTTTCAAATAGCATGGTGCATCTGCTTAACCAAGACTTGAATGCTGTGTTCGCTGACGAGGCCGTCGTCGTCACAGAGACCACAAAgtttatGTTGGACTTGAAGGCCGAGCAGATGCAAGATTACGTACAGAAAGTGATAGGCATGGCACGAAGCGCGGGCTGCAAGCCATCACGTTCTTGCGATGGTGAAAAGGACGCCCacgctgtttttgttttcacgaGGGCCGAACCACAATGCGTATAGATGTCTCTATGGCGAGCTGAGCCACAAAGCGTATGGAAGTCTTTACAGCAAGCTGAACCACAAAGCGTATGGGTCTTTACAGCGAGCTGATCCACAATGCGTATAGATGTCTCTATGGCGAGCTGAGCCACAAAGCGTATGGAAGTCTTTACAGCAAGCTGAACCACAAAGCGTATGGAAGTCTTTACAGCGAGCTGAACCACAAAGCGTATGGATGTCTCTACAGCGAGCTGACCCACAAAGCGTATAGATGTCTCTATGGCGAGCTGATCCACAAAGCGTGTGGATGTCTCTACAGCGAGCTGATCCACAAAGCGTATGGATGTCTCTACAGCGAGCTGATCCACAAAGCGTGTGGATGTCTCTACAGCGAGCCGAGCCACAAAGCGTGTGGATGTCACTACAGCGAGCTGATCCACAAAGCGTGTGGATGTCTTTACAGCGAGCCGAGCCACAAAGCGCATAGATGTCTTTACAGCGAGTTGATCCACAAAGCGCATAGATATTCCTTCAGCGAGCTGATCCACAAAGCGTATGAATGTCTCTACAGCGAGCTGATCCACAAAGCGTGTGGATGTCACTACAGCGAGCTGATCCACAAAGTGCATAGATGTCTCTACAGCGAGCTGATCCACAAAGCGCATGGATGTCACTACAGCGAGCCGAGCCACAAAGTGCATAGATGTCTTTATGTCTCTACAGATGTACGTGTTACGCCTGGCAACTGCGCCACCTCGTTCTGCGCCGTGAGCGACAAGGGCCTCAACCTCctccccagggtcttctgggtaattttcaatatggcgtcaTATTGGAagttacccagaagaccctggggagGTTGCAAGGACCTGTACCCGAGATTATGACGCAGTCTTCGATACCGTGTCCAGTCAACTCAGATTTGGTCATACGTTTATTATTGTAAAAATACTAACAACAGGATAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32NQ7	Dynein axonemal assembly factor 3 OS=Xenopus laevis OX=8355 GN=dnaaf3 PE=2 SV=1
F6S9E6	Dynein axonemal assembly factor 3 OS=Xenopus tropicalis OX=8364 GN=dnaaf3 PE=3 SV=2
Q95K25	Dynein axonemal assembly factor 3 OS=Macaca fascicularis OX=9541 GN=DNAAF3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004926 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14740 all species →	DUF4471	Domain of unknown function (DUF4471)	Domain	Interproscan
PF14737 all species →	DUF4470	Domain of unknown function (DUF4470)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028235 all species →	Domain	Dynein assembly factor 3, C-terminal domain	Interproscan
IPR027974 all species →	Domain	Domain of unknown function DUF4470	Interproscan
IPR039304 all species →	Family	Dynein assembly factor 3, axonemal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22118 all species →	DYNEIN ASSEMBLY FACTOR 3, AXONEMAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan
GO:0070286 all species →	Biological Process	axonemal dynein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19752	DNAAF3, PF22; dynein axonemal assembly factor 3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032233744.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

8.9Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	4.47	7.72
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.15	5.58
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.66	2.90
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.66	4.53
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.80	4.52
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.59	4.77
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.36	5.35
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	2.44	3.69
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	5.53	8.88
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.24	3.63
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.95	3.47
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.32	5.38
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.16	4.62
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.95	5.85
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.65	5.49
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.13	3.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.72
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.69
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.58
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.67
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.20
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.90
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.90
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.19
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.53
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.71
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.76
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.52
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.37
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.50
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.77
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.35
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.74
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.69
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.62
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.88
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.77
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.94
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.63
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.10
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.47
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.81
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.58
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.38
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.57
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.62
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.30
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.56
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.85
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.49
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.45
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.40
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.