Gene detail

Detailed information of XP_032233844.2 in Nematostella vectensis

Genomic Location: NC_064035.1:18250741...18258820
NR annotation: XP_032233844.2, THUMP domain-containing protein 1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032377953.2

TCCTGAAGTGTATCATATAAGATATCCCACCGGTAGTGcgaatttcaaaatggcggactctGGACGACAAAAGCGAAAGAAAGGCTattatgggggagggggcaaaaAACAGAAACGAGGTCTTGAAGCGCTGAAAGCTgggatgtgtggtattttgGTGACTTGTAACGAGCGGGAAAACGCATGTGTTAGCGAGGCATACAGCATCCTGAATGAAtaTGCAGACAAGTTGTATGGTCCTGTGGGTCATAGTGGAAAAGAAGATGCAGAGGAAGGGGAGGATGTTGAGGAAGCACTGGCTCGAGAAAAACAAGGCATGAACCAGGACAAGAGATTTCAGTCATTTATGAGTGGAGCGAAAAATGtagtttttataagaaccaATCTACCTGATAATGCAAAGCCGTTAGACCTGGTACGGTCAATATTTGAAGACCTTcagaaaaatggcaaaatgAAATCAAGATTATGTCTAAGATTTCTCCCTGTTGATGCGACCTGCCACGCCAAAGAGGAGGATATAAAAAAGACTGCATTATCATTGTTTGAGGATTATTTTCTTGTTGAAAATATCAAGCCATGTAAATTTGCTATAACATTTAAAGCAAGAAATAACAGCAACATGCAGCGTGATGATGTCATTAAGCTTCTGGCAGGGCTTATAGGCGAGGCAGGGAAAGGGCACACTGTTGACCTGGGTAACCCTGATTGGACAATTTGTGTTGAAGTGATCAAGAGTGTTTGCTGTTTATCTGTGGTGAACAACTACAAGGCATTTAAAAGGTACAATATCAGCGAGCTACAAAAGAGTTTAAACCCAAGTCAGTCAGGTAATTCTGAAAGTGAGACTTTGAAGCAGTTACAAGAACAGAGTAATGGAGAAAAAGATCACTCAACCATGAATAATTTGCTGAATAATGAAAAGGATTTTtcagaaaaaacaaaatctgCAGCTGAAATATCAAATCCTGAGATGTAAATACAGCGAAAAGGTGACCCTGCCAAAACATGAAATTGGTAATTgagaaaatgtttaaaaaataatttttatggGTGGAATGAAAGAAGAACTCTACAGTACTAAAGATGTCTTTAGTGTAGTGGATGCAACTTATTTTGCCAATGTGTCTCATTTTGCTAATGAAACTAGGACCCTAGCTTGTCTAGCTTGTAAATACCAGTTAAAATCAATTTGCCCAAAAGCTGCAACGGAAATTAACTGTGTCCCATTACCCCAAGAAACCACAACTCACTAGAAACAGTTTTGAAACTTGTCAACATGTTTTAAttacaaaaaatgtcaaatgtCATATTATATCACATTAAATAGTATTGTATACACTTTAATTATTAGGTATACCTTTCTAACACTTCAACTGATATGTCACTTGGTCATTACTCATAATTGTATAAAAATGTCTTACACTctttaaataatataaaaataattaaaaacatgtcttaatcaaaacaaaaaccacACTCTTTTACTTTGCACtctaaaatatttctttgaaGCTAAACCTGGGATCAAATCAATATATATGGTACGGGGATAGTACCCCAGGTGACATAAGGGGAGGAAAGCCCTACACCCACAGCAAGTTCGTCTAAATAGTGATTAAACGTTTACTGTGAAACATTACTATTTTTTGTAGGGGACAAgtggtttttataaaaaaagacaaatattTGTTTGATCACTTGTCTCATGTTGGTAAATAAATAGTATGTTTCAAAAGTTTACTTAAATCAGTTTGAGAGAACCTCATCCCTCTCTTAGTCCAATGGTAacgtatatatttttatataattcAATTGATCCCAGGCTTTGGGTATCACACATTTCTTCTAGTGGCAGTTTAGTCATGGGCAAAGTGTTGTAAAAGAGGTCAAGtaagagtctttttttttttttcagctaaAATTGTTCACAAAAAAGAATTATACTGACTTGGGTTCAGTTACTTAAAACTCTTGGCTTCCAAGAATCAACATATACTTTTAGTCTACTGGGATAAAAAAGACCTGAACTTTGAGGCTCTCTTTCCTGtcataagttttttttttaaataatacatCAACTCATTTAGAATCTAATTAGAACTAGTCAACTCATAAAAAATCATAGATAACGATGCTTTTTACAACACAGCTGTCCTAATTGTTGTAACCAGTGAAACTAATATGTAATCACACATGCAAATAACCCACAATGTTTCACTTTCTAAATTCTTGCCTGTTATATATCAGAAGGCAGTTTTAATGGTTTTGCTGTAAGGTTATTCACGGCAAAACTCAAATAGGTGTAACTATCTGTATACATTTCCTTGGACTTGTATAACAAGTGTCATGTACAGAGCTGGAAGCATTACTGCTTCGTTAATAATTCTGGTTACTAACACACTGTCAGATTCTTCTCATTAATATTGTTAGAAACCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24K03	THUMP domain-containing protein 1 OS=Bos taurus OX=9913 GN=THUMPD1 PE=2 SV=1
Q99J36	THUMP domain-containing protein 1 OS=Mus musculus OX=10090 GN=Thumpd1 PE=1 SV=1
Q9NXG2	THUMP domain-containing protein 1 OS=Homo sapiens OX=9606 GN=THUMPD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007628 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02926 all species →	THUMP	THUMP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004114 all species →	Domain	THUMP domain	Interproscan
IPR040183 all species →	Family	THUMP domain-containing protein 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13452 all species →	THUMP DOMAIN CONTAINING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06963	TAN1, THUMPD1; tRNA acetyltransferase TAN1	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032233844.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

12.8Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.97	10.95
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.43	7.48
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.59	4.96
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	6.10	6.98
whole 6 week old aboral regenerate · regenerate uncut	3	3	5.57	6.62
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	3.28	4.95
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	4.90	7.60
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.74	8.93
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.02	6.16
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.62	4.29
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.90	4.66
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	5.20	8.20
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	9.68	11.32
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	3.14	9.42
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	7.66	12.76
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.62	4.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.95
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.97
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.48
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.29
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.54
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.96
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.53
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.27
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.98
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.83
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.50
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.62
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.88
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.22
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.95
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.88
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.60
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.09
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.93
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.65
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.64
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	6.16
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.89
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.29
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.56
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.66
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.60
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.44
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.20
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	7.39
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.32
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.08
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.65
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.42
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.76
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.69
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.52
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.86
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.