Genomic Location: NC_064035.1:1404113...1423890
NR annotation: XP_032233859.2, sorting nexin-13 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5509133 |
| Transcript |
| rna-XM_032377968.2 |
| Protein |
| XP_032233859.2 |
| UniProt accession | Description |
|---|---|
| Q6PHS6 | Sorting nexin-13 OS=Mus musculus OX=10090 GN=Snx13 PE=2 SV=1 |
| Q9Y5W8 | Sorting nexin-13 OS=Homo sapiens OX=9606 GN=SNX13 PE=1 SV=4 |
| Q96L93 | Kinesin-like protein KIF16B OS=Homo sapiens OX=9606 GN=KIF16B PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003876 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00787 all species → | PX | PX domain | Domain | Interproscan |
| PF00615 all species → | RGS | Regulator of G protein signaling domain | Domain | Interproscan |
| PF08628 all species → | Nexin_C | Sorting nexin C terminal | Family | Interproscan |
| PF02194 all species → | PXA | PXA domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016137 all species → | Domain | RGS domain | Interproscan |
| IPR037437 all species → | Domain | Sorting nexin-13, PX domain | Interproscan |
| IPR044926 all species → | Homologous_superfamily | RGS, subdomain 2 | Interproscan |
| IPR001683 all species → | Domain | Phox homology | Interproscan |
| IPR013937 all species → | Domain | Sorting nexin, C-terminal | Interproscan |
| IPR003114 all species → | Domain | Phox-associated domain | Interproscan |
| IPR036871 all species → | Homologous_superfamily | PX domain superfamily | Interproscan |
| IPR036305 all species → | Homologous_superfamily | RGS domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22775 all species → | SORTING NEXIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005769 all species → | Cellular Component | early endosome | Interproscan |
| GO:0035091 all species → | Molecular Function | phosphatidylinositol binding | Interproscan |
| GO:0043231 all species → | Cellular Component | intracellular membrane-bounded organelle | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17925 | SNX13; sorting nexin-13 | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of XP_032233859.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
