Genomic Location: NC_064035.1:1187215...1197454
NR annotation: XP_032233883.2, WD repeat, SAM and U-box domain-containing protein 1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5509137 |
| Transcript |
| rna-XM_032377992.2 |
| Protein |
| XP_032233883.2 |
| UniProt accession | Description |
|---|---|
| A0AUS0 | WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio OX=7955 GN=wdsub1 PE=2 SV=1 |
| Q5FVN8 | WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Wdsub1 PE=2 SV=1 |
| Q9D0I6 | WD repeat, SAM and U-box domain-containing protein 1 OS=Mus musculus OX=10090 GN=Wdsub1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002622 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 activity RING|U-box · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF04564 all species → | U-box | U-box domain | Domain | Interproscan |
| PF00536 all species → | SAM_1 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001660 all species → | Domain | Sterile alpha motif domain | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR052085 all species → | Family | WD repeat, SAM and U-box domain-containing | Interproscan |
| IPR003613 all species → | Domain | U-box domain | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR020472 all species → | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46573 all species → | WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24764 | WDSUB1; WD repeat, SAM and U-box domain-containing protein 1 | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of XP_032233883.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 12.89 | 16.40 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 10.59 | 14.47 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 14.37 | 20.37 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 16.91 | 21.93 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 11.74 | 15.05 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 10.27 | 15.81 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 14.11 | 15.88 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 14.14 | 19.35 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 2 | 8.36 | 15.32 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 12.44 | 13.25 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 13.45 | 15.66 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 15.44 | 22.45 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 10.23 | 11.01 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 2 | 8.57 | 15.51 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 14.22 | 17.21 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 2 | 9.10 | 18.16 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
