Gene detail

Detailed information of XP_032233884.2 in Nematostella vectensis

Genomic Location: NC_064035.1:1187215...1197453
NR annotation: XP_032233884.2, WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032377993.2

GTGGTAATAAAAACAGaatctgttgttgttgagtGCAGAATTAGAGAGAAATAACGTCGTAAACTCGGGTTTTTATAATGGCTAATATTAAGTACGTGATCTCAAGACATACTAAGGATGTAACAGGCTGCTGCTTTTCTGCGAATAGTCGGGTCTTAGCTTCTTGCTCTGGGGATAAAACAGCTCGACTTTGGGACGTGGAGAAAGGGACTGAACTTGCTCAATCGCCACTCGATGGCCATAACTATCATGTGAATTCGTGCAGTGTTTCGCCTTTTGGGACACTTATGGCCACTGCCTCTACAGATTCTACTTTAATGCTATGGAATCTTGAAACAGGGGAATGTTTAGCGGTACTAGAGGGACATACAGGGGCTGTCAGAGTTTGTCGTTTCTCTCCAAATTCTCAATTTCTAATATCGGGGTCAGCCGACGAAACGTTTATCATTTGGGATGTTTTACTGAAAAAACCTGTTAGATGCGTTGATAAACTAGAGAGCAGTGTTACAGCCTGTGCGTTTACTCCAGATGGCTTGCACATCATAACAGGGACAAGCGAGGGAAAACTTGCGATTTGGGAAGCTCAGAAAGGAAAATTCATTACTCAAGTTGAAGGGCATGACATGGGTGTCGGTGCCTGCGATTTCTCTCCAACATTTGGGTCTGCAGTCCCAGGACTTTCAGATACTAGTGGCAGTGCCCCACAGTTCTTGCTTGCATCAGGGGGGAATGACAACCTTGTACGGCTATGGACTATTTACACTGCCTCAGCATTTTCTGAAGAATGCCACATTGCCAGCCGCTGTGTTCTTGATCAACACCAGAGCCAAGTATGGGATTGTTGCTTCTCCCCAAATGGAAAAATCCTCGCTTCAGCATCTGGGGACAAGACAGTTATACTCTGGAATCCACTTAATGGTGTAGCACTTCACACAATAACTGGACATTCAAGATATGTGACTTGTTGTTCATTCTCCCCTGATGGGAAGTGGCTAGCTACAGCAAGTGGAGATCGCACACTCAGGCTATGGCAACTCACTCTCACTGAAAATGGGGAGCTTGACACTGGTGCTATGGCACAACAACTTCCTCAAGATAGCAAACAACCCTCAGTATTACAGAGAGGTGAGCGTAAGCGTCTTGTGACCTGGACAGTAGAGGAAGTGTGCACATGGCTGGAATCCATCGGCCTAGCTCAGTACTCAGAAGTGTTCCGGAATAATGCAATAGATGGCCACGAGCTGTCTAACATGACAGGCAACGTTCTCCTCACGGACCTGACAATAGGTCCTGCTGGCCATCGGAACAAGATCTTGAGAAGTATCAAGGACACGAAGAAGGAGGAGATAGATGATAACATCCCAGACGAGTACCTTTGCCCTATTTCACGAGATGTTATGAGGGATCCTGTCATTGCTGCAGATGGTTACTCATATGAGCGTGAGTCCATCGAGTCGTGGCTTCAAGCTGGACGCCTGACAAGCCCCATGACAAACGCACCGCTGCGTAACTCGACACTGACTCCCAACAGAATGCTCAAGAACATCATCCAGCGCCACTTTACACAGCACCTAGAGCAACAGGTCTAGCACATCCGTATGGTCTTCATCATAGCGGCACCTAGAGCAACAGGTCTAGCACATCCGTATGGTCTTCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACATCCGTATGGTCTCCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACAACCTTATGGTCTCCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACAACCTTATGGTCTCCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACATCCGTATGGTCTTCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACAACCTTATGGTCTCCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACAACCTTATGGTCTCCATCATAGGGGCAACGAGAGCAACAGGTCTAGCACATCCGTATGGTCTTCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACAACCTTATGGTCTCCATCATAGGGGCACCGAGAGCAACAGGTCTAGCACATCCGTATGGTCTCCATAATAGGGTCACCTAGAGCAACAGATCTAGCACATCCGTATGGCCTACATCATAGGGGCACGCCTTAGACAAAGAAACCCGAGGCGACACCTTGGACAGCTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGACAACTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGGCAACTAAGGCAACGCATTCAAACTCGAGGTGACACCTTGGGCAACTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGACAACTAAGGCAACGCATTCAAACCCGAGGCAACACCTTGGGCAACTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGACAACTAAGGCAACGCATTCAAACCCGAGGCAACACCTTGGGCAACTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGGCAACTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGACAACTAAGGCAACGCATTCAAACCCGAGACGACACCTTGGGCAACTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGGCAACTAAGGCAATGCATTCAAACCTGAGGCGACACCTTGCGCAACTAAGGCAACGCATTCAAACCCGAGGCGACACCTTGGGCAACTAAGGCAATTTTACCTTGGACAATTAAGACAACTTTATGTAGAAGAAGATTAATAAGGTCGCAGCCTAGCCTGGctctcatttaaaaaaaaaaaaaacaatgcgcAGCTTAAATTTAACAAAACTTTATCTTTACCTGCAAGGGCGGAAAAGCCTATTAAAAAGAATTCGAACAGTATTCGAATGGTAAAATGAAGACGATGTGATCACAAGAAAAGCCAGATCTCCAATATCCTGGGTGCCAGAGGTTCCCGCACCGCCGAACACCCGAAGGCACAACAAATTAAACCCGAAGGTTCAACGGATTAATCCCGAAGGCGAACGAATCCCGAGGTTGTAGGAGGTTGAGGCGACCGGCCTCTTGCATCCAGGATATATCTTAACTTGTAGATATTTTTAAGTAagatatagaaaaaaataaacaccgaAAAACGA

Protein

Uniprot

Gene family

Uniprot term	Description
A0AUS0	WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio OX=7955 GN=wdsub1 PE=2 SV=1
Q5FVN8	WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Wdsub1 PE=2 SV=1
Q9D0I6	WD repeat, SAM and U-box domain-containing protein 1 OS=Mus musculus OX=10090 GN=Wdsub1 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|U-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564	U-box	U-box domain	Domain	Interproscan
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052085	Family	WD repeat, SAM and U-box domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46573	WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24764	WDSUB1; WD repeat, SAM and U-box domain-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala