Gene detail

Detailed information of XP_032233987.2 in Nematostella vectensis

Genomic Location: NC_064037.1:1843801...1858018
NR annotation: XP_032233987.2, uncharacterized protein LOC5509216 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509216

ATGTCGACAGATCTGGATAGTGTCAGTCGCAGCGAAGTCGTAAAGTCAAGGTTTCGACGAGCTGCCATCAAGGCAAAGAATTACTGGGTTTTTACCAGAAGGTCGAGTTTTGAGGGGTTCTTTGCATCAAAAGGTGCAGCTTTCTCTATTCCTGATGGAGACTTTGCAAGAAAAGCATCTAAACATGGAGGCGAGATGCAAGTTCATCTGCAGTCCATGGTTAATCTCTTGCGTGATAATGATGTGCTCAGACTTGTGGTAAAATTAGAGACCAAGTACTATCTTCCCGGCAAAGTGCGCTACCTGGCTGTAGTGTCATCATTCAGCCTGGACGACATTGAGGAGAGTGTAGTTCTCGGGATTGACTGGGTTGATGAAAGTGCAACAATCGGACTTGTGTTGCCATTATGGAGAGACACAGCAATAGAGTTGGATGGAGATGGGGGGTTTGAGCTCTCTACAAACTCTACCGTGCATTTTCTCAAGCCTGTCTCTGTGCAGACAATGTGGACTGCATTTCAGTGGATCCACAAGTGCTCTGACAATGCCAGGAGAAATAATCAATACCCTGCAGGTACCTCGCATTCGTGGGTGAAATACTACGAGAACCAAATCAGCTCAGACCAAACTTGCATCAAAGAATGGTTTGAAACTGAAGAAAATCTTAAGATTGCAGATGACTCTGTTGGAATAAGCAAAGAAGATGAACTTCTTAGAAAACTTTTGCGACACAAATTAAGAGAGGTTATGATGACGGTAGATCTTGAAGAAGTCACTAGCAGACAGGTGCGTGAGCTAGTGGAAGCGGAAGTTCAGATGGATCTGAAACAGTACAAGCAATATATTGACAAAGAGATGCTAACCATCTTTGGCCAGATGGACTCGGCTTCTAAAATATATGACCATGTTTATTTGGGATCAGAGTGGAATGCATCCAACTTGGAAGAACTCAAAGAAAATGGAGTTGAATATGTGCTCAACATCACTAAAGAAATTGATAACTTCTTTGCTGGGACGTTCACCTACTTCAACATCAGGTTGTGGGACTTGGAGGACTCGAATCTCCTGCCCTACTGGGACGAAACCTTCAAGTTCATTAATCAAGCCAGGGATAAGGGCTCTAAAGTGCTGGTCCACTGCAAGAGGGGGATTAGCAGATCTGCCTCTACGGTGATAGCATATGGTATGAAGGAGTACGGCACGAGTCTGAATGACACCATGAAGCACGTGAAGTCTCGAAGGCAGTGCGTTAACCCTAATCAGGGATTCTGGAAGCAACTTATTACTTACGAAGGCATTCTTAATTCAAGTCGCCATAGATACAACGAGCTGTTCAACAACAACAAACAGCGGTCCAACTCGGAAATTATACGGGAAACGAAGCGTAAAAGACGACGGCACGGTCGCCATAAGCACAGCACCATAACAACAACTCGCACTCCAGAGGTCGACATGGTTATCAATAAAACCAAACGTAACTCAATAGAGAGGGATACATTCGGGGATATCATAACTGAGGACTCTGTTGGCGAGGGTGAGAGTGATGATGGTGGTAGCGCTGGTTTTGAGGATGATGATGAGGAGGAGGAAGAGGATGGGTCCATTATGATGATGAGATTCCTAAGGGACACTAGCTCAGGTGACGATGTGTTCTATTCTTGGGAGACTGAAGACATCGATAGCACTACTCCTGTGCGTAGTAGCACGCCTGATCCCGATCATATCGGAATAAAAGAGGATCAGAGCATAGTAAACAAAGGCGAGAAGAGAAGGCCTATTCATCGAACGAACTCTAGTCCTATGCTGCGTAAAAAGGTCAAACGGAAGAGCCATAAGAAGACTTTGGATAACAGCGAGCTTGATAGGTGCCAATCTTTACGGGAGATGTTAACAGGGCGAGTAGCAGCGCTGAGGGAAGACCTACAAGGAAACAAGGGTAGATCAACTGGTGTAAAAATAGCAAAGACTCTTTCAACAGAGAGCGCTGAAGAGACATGTAAAGCAGGTGAGACTATTGAAGAGCCGGTGCCTGAACGGGAAATCCAGCTTGTGCCGCTACTGAACGAGAAAAATGAACTGTTTATTAATGATGGAGACGAGGAGATTTTTGATACGGGATTGATGGAAGGAGAGACCCCTGATGTCGGCAGTTCGGAGGACCTACATCAGAACGTCGATGCTCATGGTTTAAGCGCTGTGAAAACAGGTACAGTGAAACGACAATCTAGAAACTTTGAAGAAGGAAAGGTGAACCTCCCTTGGGAATGGGAGAAAATGGGTCCTGATCCAGCGTCAGAACCAAAGGAAGTAATTACCTTTCTACTAAAAGAGACGACGGGGGTTCAAGGGGCTCCAGTGCCAGAGGTAGATCCTGGGGTAGTCAGGAAGCATGCATCCGCCTTAGAGAAAAAGTACCTTGGGGTGCAAGAGAGGGAATCCAAACTAAGTGGATCTGACTCAGAGATTGACCATGGGAGCACAGAAAGCCCAGTGTCTATACCACCGAAGAAACTGATAATCCCAGAAACATCCTTCGCGATCGAAAGTGTTGGTAAAACACCCCAAGTCGAGCAGGGCTTTGTAGGTATTCTTGATACCAGTGCAGTGCGGCGTAAGATCAACGAAGATATGCACAAAGAGAAGCAACAAAGGCGGCGGCTGAGTGGTGAACAAAAAATACAGAACATGACTTCTACAGCAGCTGGAAATGTTAAAGCTGTTGAGGTCATGGAACCTGACTTAGGAAAGTCGAAAGCGGCGGTGACTTTAAAGGACTCTGATGAGGAGCCTATAAAGGGAATTGTCCGAAAACATGCGAAAGGGTTTGAAGAAAGGCATAGGGGACTAGAAGTTGGTTCAAACCTTGACCAGGATTCTTCGCAGCAGCTGAATGCTGAGACTTTAGAGGCTTTGCCTTTTATCAAGAATACGAAGGCTTCAAAGTACAAAGCGAATCAAGAGCCTGAAGAGTCTAAAGACGATTTCGATTTAGATTTGATGCTCCTGAAAGTCAGTGAAGATAAAAAGAAACAAAAGCTCGTCCATCAGTCAGAGTCATTGGAGGGAAACATTACGACGGTAGCCCCTTTAGAAGATAAGGCGGAGCTTGATCCAGCTGATCGGGATGACTGGGGAGAAGGAACTGTTGACGAAATTCCTAGACCTGGCACAGTTCGGAGAAATACTGAATTACTTCTTGGAAAATCGTCAACCAAGGAAGAAGCTAAAGAGGAATTGGTGACCGTTTCGAATGTTAACTCAGATTTAGTGCATCTAAAATCAGCACCGAGCCGAGAGGCAGTTCCTGCACAGCATATTGTTGAAAACTCTGGAGCGAAAGTGTTTTATTTTGAGAGGACAGTTTCCGCTGAAGCTCCGAGCCCTCCGGGATCAGTAAAAAGGAACAAGCAAATCTTTGAAGGGAAAAGGGAACAAAATGCAGATGAGAACATTATATTACCGGAGGTCCCACAGAATGAAGAAATAGAGGCTGGAGTGAAAGACGAGGAGGAGGAAACCTCGAAAGAGGATTCTGTTTTAAGTCCCACTGGAGCAGTAAAAAAACAGACACAACTCTTTGAAGGGAAAGGTGAATTCTCTTCAGGCTGGACCAAAAGTTCGAAAAAGGAACCGGAGATAATAAAAGTAGCAGTTGGGGAAAGAGAAGCGGATGCAATGTCGAAGGAGGACTCTCTTCAAGGGCCCACTGGAGCGGTGAGAAGGCAGACAAAACTCTTTGAGGGTAAAGAGTCGCTTGAAAGTAACTTTAAAGACGAACCAAAATCAGATGTGAGCAAAACGTCCCAAAACGATCTGGAAGTTTTAAAAGCTTATTCCAGCGAGGGAGAGGAGGGGAGTGAAATGACGAAAGAGGAATCCGTTGACACGTCTAGTGTCGTAAACGTGAAGTTTCATTTGAAGTTGCTGGAAGAGATTATTAGATCTTCGAACGCCCGTGAACAACACAAGCATCGCACAAATAAGGCATTAGCTGCCATAGAGGAGAAACGAAGTCGGATAGATCTACAACGGAACAAAAAGGATTCCGGACTATTCCAAGACAATAAATCTCAGGTAGAATTTGAAATGGAATCGTTGGATGAAGACTATGTCTTTGTTCCTGATAACGATGAAGAAGACGACGCGAATACTTCACATGATGACTTGCTGGACAGCCTGAGCCACTCTGCAGTGTCCTTGGCTATAGAAAATGCCCAGAAGAATTTAGATGAAGAAGAAACAATTGCTAGCTCAGGACATGTTAAACGAAGAACCCTCCTAATCGAGGAGCAGCTTCGGGAGAAGGGGTCGCCTGTTCGGAGGCACGTTTCTTTGCCGAAGTCAACCCGACCGGAAGATCGGCCGGTGGTTCGTAAACGATCCCTGTCAGACATTACAGTAAAAACCCGCGAGTAA

Transcript

rna-XM_032378096.2

GTACCCAAGGCTTACGGCTGACGTGAAAAGTAAACTGAGCGAGAACACCCGCGTCTCCATGCGCTAAAGGAGCGGGAAGCTGCCAGAGAAACCTCTTCATAACATGCTTACCAAGACAccttgaaaacaattttttttatttatcttgcCCGCGAATTGCACCTAGGAACTGTACGAATTGTTCACCCCCCGAAGACTGGGATGTTTATAGCCTATAACATACAAGATTTACGCCCATCGAAGTATATAAAGTGTGGATCATTTATACAGGATCATGTCGACAGATCTGGATAGTGTCAGTCGCAGCGAAGTCGTAAAGTCAAGGTTTCGACGAGCTGCCATCAAGGCAAAGAATTACTGGGTTTTTACCAGAAGGTCGAGTTTTGAGGGGTTCTTTGCATCAAAAGGTGCAGCTTTCTCTATTCCTGATGGAGACTTTGCAAGAAAAGCATCTAAACATGGAGGCGAGATGCAAGTTCATCTGCAGTCCATGGTTAATCTCTTGCGTGATAATGATGTGCTCAGACTTGTGGTAAAATTAGAGACCAAGTACTATCTTCCCGGCAAAGTGCGCTACCTGGCTGTAGTGTCATCATTCAGCCTGGACGACATTGAGGAGAGTGTAGTTCTCGGGATTGACTGGGTTGATGAAagTGCAACAATCGGACTTGTGTTGCCATTATGGAGAGACACAGCAATAGAGTTGGATGGAGATGGGGGGTTTGAGCTCTCTACAAACTCTACCGTGCATTTTCTCAAGCCTGTCTCTGTGCAGACAATGTGGACTGCATTTCAGTGGATCCACAAGTGCTCTGACAATGCCAGGAGAAATAATCAATACCCTGCAGGTACCTCGCATTCGTGGGTGAAATACTACGAGAACCAAATCAGCTCAGACCAAACTTGCATCAAAGAATGGTTTGAAACTGAAGAAAATCTTAAGATTGCAGATGACTCTGTTGGAATAAGCAAAGAAGATGAACTTCTTAGAAAACTTTTGCGACACAAATTAAGAGAGGTTATGATGACGGTAGATCTTGAAGAAGTCACTAGCAGACAGGTGCGTGAGCTAGTGGAAGCGGAAGTTCAGATGGATCTGAAACAGTACAAGCAATATATTGACAAAGAGATGCTAACCATCTTTGGCCAGATGGACTCGGCTTCTAAAATATATGACCATGTTTATTTGGGATCAGAGTGGAATGCATCCAACTTGGAAGAACTCAAAGAAAATGGAGTTGAATATGTGCTCAACATCACTAAAGAAATTGATAACTTCTTTGCTGGGACGTTCACCTACTTCAACATCAGGTTGTGGGACTTGGAGGACTCGAATCTCCTGCCCTACTGGGACGAAACCTTCAAGTTCATTAATCAAGCCAGGGATAAGGGCTCTAAAGTGCTGGTCCACTGCAAGAGGGGGATTAGCAGATCTGCCTCTACGGTGATAGCATATGGTATGAAGGAGTACGGCACGAGTCTGAATGACACCATGAAGCACGTGAAGTCTCGAAGGCAGTGCGTTAACCCTAATCAGGGATTCTGGAAGCAACTTATTACTTACGAAGGCATTCTTAATTCAAGTCGCCATAGATACAACGAGCtgttcaacaacaacaaacagcGGTCCAACTCGGAAATTATACGGGAAACGAAGCGTAAAAGACGACGGCACGGTCGCCATAAGCACAGCACCATAACAACAACTCGCACTCCAGAGGTCGACATGGTTATCAATAAAACCAAACGTAACTCAATAGAGAGGGATACATTCGGGGATATCATAACTGAGGACTCTGTTGGCGAGGGTgagagtgatgatggtggtagcgCTGGTtttgaggatgatgatgaggaggaggaagaggatGGGTCCATTATGATGATGAGATTCCTAAGGGACACTAGCTCAGGTGACGATGTGTTCTATTCTTGGGAGACTGAAGACATCGATAGCACTACTCCTGTGCGTAGTAGCACGCCTGATCCCGATCATATCGGAATAAAAGAGGATCAGAGCATAGTAAACAAAGGCGAGAAGAGAAGGCCTATTCATCGAACGAACTCTAGTCCTATGCTGCGTAAAAAGGTCAAACGGAAGAGCCATAAGAAGACTTTGGATAACAGCGAGCTTGATAGGTGCCAATCTTTACGGGAGATGTTAACAGGGCGAGTAGCAGCGCTGAGGGAAGACCTACAAGGAAACAAGGGTAGATCAACTGGTGTAAAAATAGCAAAGACTCTTTCAACAGAGAGCGCTGAAGAGACATGTAAAGCAGGTGAGACTATTGAAGAGCCGGTGCCTGAACGGGAAATCCAGCTTGTGCCGCTACTGAACGAGAAAAATGAACTGTTTATTAATGATGGAGACGAGGAGATTTTTGATACGGGATTGATGGAAGGAGAGACCCCTGATGTCGGCAGTTCGGAGGACCTACATCAGAACGTCGATGCTCATGGTTTAAGCGCTGTGAAAACAGGTACAGTGAAACGACAATCTAGAAACTTTGAAGAAGGAAAGGTGAACCTCCCTTGGGAATGGGAGAAAATGGGTCCTGATCCAGCGTCAGAACCAAAGGAAGTAATTACCTTTCTACTAAAAGAGACGACGGGGGTTCAAGGGGCTCCAGTGCCAGAGGTAGATCCTGGGGTAGTCAGGAAGCATGCATCCGCCTTAGAGAAAAAGTACCTTGGGGTGCAAGAGAGGGAATCCAAACTAAGTGGATCTGACTCAGAGATTGACCATGGGAGCACAGAAAGCCCAGTGTCTATACCACCGAAGAAACTGATAATCCCAGAAACATCCTTCGCGATCGAAAGTGTTGGTAAAACACCCCAAGTCGAGCAGGGCTTTGTAGGTATTCTTGATACCAGTGCAGTGCGGCGTAAGATCAACGAAGATATGCACAAAGAGAAGCAACAAAGGCGGCGGCTGAGTGGTGAACAAAAAATACAGAACATGACTTCTACAGCAGCTGGAAATGTTAAAGCTGTTGAGGTCATGGAACCTGACTTAGGAAAGTCGAAAGCGGCGGTGACTTTAAAGGACTCTGATGAGGAGCCTATAAAGGGAATTGTCCGAAAACATGCGAAAGGGTTTGAAGAAAGGCATAGGGGACTAGAAGTTGGTTCAAACCTTGACCAGGATTCTTCGCAGCAGCTGAATGCTGAGACTTTAGAGGCTTTGCCTTTTATCAAGAATACGAAGGCTTCAAAGTACAAAGCGAATCAAGAGCCTGAAGAGTCTAAAGACGATTTCGATTTAGATTTGATGCTCCTGAAAGTCAGTGaagataaaaagaaacaaaagctCGTCCATCAGTCAGAGTCATTGGAGGGAAACATTACGACGGTAGCCCCTTTAGAAGATAAGGCGGAGCTTGATCCAGCTGATCGGGATGACTGGGGAGAAGGAACTGTTGACGAAATTCCTAGACCTGGCACAGTTCGGAGAAATACTGAATTACTTCTTGGAAAATCGTCAACCAAGGAAGAAGCTAAAGAGGAATTGGTGACCGTTTCGAATGTTAACTCAGATTTAGTGCATCTAAAATCAGCACCGAGCCGAGAGGCAGTTCCTGCACAGCATATTGTTGAAAACTCTGGAGCGaaagtgttttattttgaGAGGACAGTTTCCGCTGAAGCTCCGAGCCCTCCGGGATCAGTAAAAAGGAACAAGCAAATCTTTGAAGGGAAAAGGGAACAAAATGCAGATGAGAACATTATATTACCGGAGGTCCCACAGAATGAAGAAATAGAGGCTGGAGTGAAAGACGAGGAGGAGGAAACCTCGAAAGAGGATTCTGTTTTAAGTCCCACTGGAGCAGTAAAAAAACAGACACAACTCTTTGAAGGGAAAGGTGAATTCTCTTCAGGCTGGACCAAAAGTTCGAAAAAGGAACCGGAGATAATAAAAGTAGCAGTTGGGGAAAGAGAAGCGGATGCAATGTCGAAGGAGGACTCTCTTCAAGGGCCCACTGGAGCGGTGAGAAGGCAGACAAAACTCTTTGAGGGTAAAGAGTCGCTTGAAAGTAACTTTAAAGACGAACCAAAATCAGATGTGAGCAAAACGTCCCAAAACGATCTGGAAGTTTTAAAAGCTTATTCCAGCGAGGGAGAGGAGGGGAGTGAAATGACGAAAGAGGAATCCGTTGACACGTCTAGTGTCGTAAACGTGAAGTTTCATTTGAAGTTGCTGGAAGAGATTATTAGATCTTCGAACGCCCGTGAACAACACAAGCATCGCACAAATAAGGCATTAGCTGCCATAGAGGAGAAACGAAGTCGGATAGATCTACAACGGAACAAAAAGGATTCCGGACTATTCCAAGACAATAAATCTCAGGTAGAATTTGAAATGGAATCGTTGGATGAAGACTATGTCTTTGTTCCTGATAACGATGAAGAAGACGACGCGAATACTTCACATGATGACTTGCTGGACAGCCTGAGCCACTCTGCAGTGTCCTTGGCTATAGAAAATGCCCAGAAGAATTTAGATGAAGAAGAAACAATTGCTAGCTCAGGACATGTTAAACGAAGAACCCTCCTAATCGAGGAGCAGCTTCGGGAGAAGGGGTCGCCTGTTCGGAGGCACGTTTCTTTGCCGAAGTCAACCCGACCGGAAGATCGGCCGGTGGTTCGTAAACGATCCCTGTCAGACATTACAGTAAAAACCcgcgagtaaaaaaatcatgtttGAGCTAGCCTGAACAGTTCCTTATTTGAATGGAAAATCGCTACTTCAACATGAAGGATTCTTGCATAGCTTTGCAGCTACATCGCTATTTTATGATGATCTAGAAAAACAAGCACCTGTTTTTAATCttcttggctattttttagcttGTTTTAGGGGGTGTAAATAACACATTGTAGGCTAACAAGTTCTTAATTTTCAGGTTCTTAATCGCGGGTttttactgtactgtactaaCACTCCCGACCCATTCTTCATAACCTTTAGAAAACTCcataaaatatcttaaaaacaTAATTTGGTATGCTTGCTCATGTAGAGGCCGTTGCAGGACGATAGGCAGGACGCCACTTCGCCTTCTATTTAAGCCTGCAACGCCCTGTAGAAGCTAGTTGGTATTGTTAGGGACAAAGAATCACTGGAACAGTATAAAAAGAATaacaaatttgaaaatattacCAAGTTACTGTTTCAGtcgttcttttttttctgtggcGAAAAGCCACGACAAGGGTAAAGCCTAACTATGGATTCTAAAATCTGAATATTTATAATCCTCCTGTCTTAATGTTCGTAGTGCTTTAGAAACATAGCGTAGTATTGAAAACTGGCAAAACAGGTAAAACCTGTCAGACGAGTTATCACATGATAAACTAAAGCTGAAGCTTAAAAAATTACGAGGGTGTGAATAAAATGTTTGTATATATTTATTGCTAGAAggtctttatatttttaatattgacATTGGCGAATTAGAACtaaaatcgtttttttttctactttgaCCTTGTTGTACAGATCTTAGATTCAATAAACATTTTGTACTGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76I76	Protein phosphatase Slingshot homolog 2 OS=Homo sapiens OX=9606 GN=SSH2 PE=1 SV=1
Q5SW75	Protein phosphatase Slingshot homolog 2 OS=Mus musculus OX=10090 GN=Ssh2 PE=1 SV=2
Q76I79	Protein phosphatase Slingshot homolog 1 OS=Mus musculus OX=10090 GN=Ssh1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08766 all species →	DEK_C	DEK C terminal domain	Domain	Interproscan
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014876 all species →	Domain	DEK, C-terminal	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR043587 all species →	Family	Protein phosphatase Slingshot-like	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45864 all species →	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05766	SSH; protein phosphatase slingshot	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032233987.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

28.5Max TPM

15.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	16.99	18.95
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	14.39	17.93
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	24.58	28.52
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	16.15	18.89
whole 6 week old aboral regenerate · regenerate uncut	3	3	15.38	16.74
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.15	18.36
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	16.00	17.63
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	18.01	20.93
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	14.09	16.00
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	14.41	16.00
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	15.15	15.81
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	14.71	17.35
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	16.19	17.62
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	11.78	19.06
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	18.72	21.59
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	12.17	19.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.95
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.25
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.77
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	17.93
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.00
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	11.25
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	28.52
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	24.39
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	20.81
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.89
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	15.52
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.04
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.74
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.51
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.90
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	18.36
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	18.09
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	17.63
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.34
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.03
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	20.93
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	20.52
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.57
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.00
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.24
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.05
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.83
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.39
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.81
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.70
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	13.94
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	17.35
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.32
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.45
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.62
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.98
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.95
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	19.06
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	16.27
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	21.59
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.77
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.81
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	19.06
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.46
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.