Gene detail

Detailed information of XP_032234041.2 in Nematostella vectensis

Genomic Location: NC_064039.1:15950837...15961336
NR annotation: XP_032234041.2, uncharacterized protein LOC5509253 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509253

ATGCCTCAATCCGCAAGGAGCGGTGTATCTTCCATGGCTCAAAAAACCCTTTTTGTGGCAGTTGTTGTTGTATTTGGAGCATCTTTGTGCAAGGCTGACAATTTTAAGTTCGGTTTCACAAGAAGCAAAGACTGGGGATGGCCCGGCAGCTGCGTTGACTACAGCATCAAAGTCACAATCCCAGAAACCACTCCACTCAAACTCAAGGTCAAATCATCCTTCAACCAGTCAGCGGTAGTTCGCATCAAACAACTTAAAGTTAAGTCTCTCACCTGCGAGGGAAACACAGGAAGCCCGACGCCTGTCGTGACATCCCGGGAAGGAAATTTGAATAAAATTGACACATCTATTATTGATCTGGGTGATGTCACTGTAGAACCTGGCTCTACCTGTGTTGTGGACTTTAGTGCAAAGCTCCAGCTGCTAGACCACCCCAGCCTGACGCATGGCGAGACTCTGTGGCAAAGCATTGGGGTGGAGTACCTGAACATGTCTGTGTGGGCGGCACAGCAGGCTTACCGCGTTATGGTTGCACCTGCTACAAGGCCTAACTTAGATATCACCGTCCAGCCCATGCAGGCGTATACGTCTGACGTCATCGTGGGCCCAAATGTCGTGTACCACGTGAAGTTAGCACATAACTGCGAGTCATCAGCTGTCGCCGAGACGTCAGAGATCGTACTCGACATACCGGACAAACTGGTTTACGCAAGCTTTGCAGCCAATAGTGGCTCTCTGGCCGTCACCAAGGAGTCAAGCCCTGCCACGCAGCTTAAGTTCTCGGCTGGACTTATGAACTTCACAGACGTGGTAGACTTCAACATCACATTTACGTTTGACAGCGCTAGGTCCCTGGCAGACAGCAAGCTACACTCCTTTGCGGTCTATGTCAATCTCAAGTACACCAGTAACACTTGTAGTAGCCCAGACAAGACCTTCACAGGGAGGGTGGGCCCGGCTCCAAGCTGGCTCTTCTACTCCCCAGCCACTACATGTGATGACGCGAGTGGGCCCACAGGGAACCCGACAATGAGCGCCTCTTCGCACGCCTCTGATGGAGACCCTGGGCGCTCGCTGATCGTGGCCGGCCGCGGGGATGTTTGGAAGCCAAAGGCCGGATACAAGAAAGACAAGAACCAATACTTGCAAGCCAAATTTCCGAGCCGTGTCAAGATCACTCGCATCACCACCCAAGGGTTTGGCTACGCCAATGGCACGGACGTCTGTTACGTGAAAAGTCTGCGATTGTACTACAGCGATAACGGGGTCGACTGGAAAGCCTATAAGATTGGCAGCAAGTACAAGACATTCAACGCCAACAAGGACGGTCTGAAGAAGACCGAGATTCCATTGGAGCGTCACATAGAGGCGACATACATCCGCATTAACCCGCAAGACATGATGAACGAGATCTGTCTGCGCGTTCAGATCCATGGCTGCACCTCCTCCAGCCCGCTCCCAGCGTTTCCTGCTATACCTAACCGCTCCGTGTTGGTCCATGGTACAAACGTCTACATCTGCAACTGCTGGATGAGCAAGGACGCATCAGACTCATGCTGTTACTTCACAACGGACAGAGGCGCAACATGGAACAACGTCGACTTTCGTGTGAAGCATGTGGCCTTCGTCGATCCGACCACCAATCAGGTGTACGGGTTGGGATCAAAGACGGCGTACCTTCGAAACAAGGCTGGTAAATGGCAGACCATCACCATGGCAACCTACGACACTGCTAAAGCCTTGAGTACTTCCGTTCATGGCAAGAGCGCTGACCACCTGGGAAATTATGAAGGGATGCCCGCCAATCCGGAGACTGCCGATCGCCTGACTGCCAGCGACTCGTCCATTTGGGGAGGGGGGTACTGGCTGGACCCCCCCTTGATCCGCCGCAGCCACTGGTCAAGGAATACACATGTCTCTGGATACAGGGAACACCTGGGAGCTAAAGGCTTCTTGGCATTGCAAAGATCCTGTTGCCTGAGCGTTGGTTGA

Transcript

rna-XM_032378150.2

CCCTGGGACCCCGAGGATGTGCCGTATAGAAaccgagggtgttagataaattgcgctacgtAAGGGAGtcattgtttcaaatattttaatagaaaataggcaaaatcaCGTTTTTTCTATAGAagaatttttcggaagcgataaaaatcgctaaaagcGGTAGATTTtgtgctcaacgcgggagagcgggagaaggggtccaaaatcttgagactcccgcctaatgcgggagagttgacagCTCTTTCCTGGGCGCAGGTGCATTAGACGTGCTAGATAACCCATGCCTCAATCCGCAAGGAGCGGTGTATCTTCCATGGCTCAAAAAACCCTTTTTGTGGCAGTTGTTGTTGTATTTGGAGCATCTTTGTGCAAGGCTGACAATTTTAAGTTCGGTTTCACAAGAAGCAAAGACTGGGGATGGCCCGGCAGCTGCGTTGACTACAGCATCAAAGTCACAATCCCAGAAACCACTCCACTCAAACTCAAGGTCAAATCATCCTTCAACCAGTCAGCGGTAGTTCGCATCAAACAACTTAAAGTTAAGTCTCTCACCTGCGAGGgaaacacaggaagcccgacgCCTGTCGTGACATCCCGGGAAGgaaatttgaataaaattgACACATCTATTATTGATCTGGGTGATGTCACTGTAGAACCTGGCTCTACCTGTGTTGTGGACTTTAGTGCAAAGCTCCAGCTGCTAGACCACCCCAGCCTGACGCATGGCGAGACTCTGTGGCAAAGCATTGGGGTGGAGTACCTGAACATGTCTGTGTGGGCGGCACAGCAGGCTTACCGCGTTATGGTTGCACCTGCTACAAGGCCTAACTTAGATATCACCGTCCAGCCCATGCAGGCGTATACGTCTGACGTCATCGTGGGCCCAAATGTCGTGTACCACGTGAAGTTAGCACATAACTGCGAGTCATCAGCTGTCGCCGAGACGTCAGAGATCGTACTCGACATACCGGACAAACTGGTTTACGCAAGCTTTGCAGCCAATAGTGGCTCTCTGGCCGTCACCAAGGAGTCAAGCCCTGCCACGCAGCTTAAGTTCTCGGCTGGACTTATGAACTTCACAGACGTGGTAGACTTCAACATCACATTTACGTTTGACAGCGCTAGGTCCCTGGCAGACAGCAAGCTACACTCCTTTGCGGTCTATGTCAATCTCAAGTACACCAGTAACACTTGTAGTAGCCCAGACAAGACCTTCACAGGGAGGGTGGGCCCGGCTCCAAGCTGGCTCTTCTACTCCCCAGCCACTACATGTGATGACGCGAGTGGGCCCACAGGGAACCCGACAATGAGCGCCTCTTCGCACGCCTCTGATGGAGACCCTGGGCGCTCGCTGATCGTGGCCGGCCGCGGGGATGTTTGGAAGCCAAAGGCCGGATACAAGAAAGACAAGAACCAATACTTGCAAGCCAAATTTCCGAGCCGTGTCAAGATCACTCGCATCACCACCCAAGGGTTTGGCTACGCCAATGGCACGGACGTCTGTTACGTGAAAAGTCTGCGATTGTACTACAGCGATAACGGGGTCGACTGGAAAGCCTATAAGATTGGCAGCAAGTACAagACATTCAACGCCAACAAGGACGGTCTGAAGAAGACCGAGATTCCATTGGAGCGTCACATAGAGGCGACATACATCCGCATTAACCCGCAAGACATGATGAACGAGATCTGTCTGCGCGTTCAGATCCATGGCTGCACCTCCTCCAGCCCGCTCCCAGCGTTTCCTGCTATACCTAACCGCTCCGTGTTGGTCCATGGTACAAACGTCTACATCTGCAACTGCTGGATGAGCAAGGACGCATCAGACTCATGCTGTTACTTCACAACGGACAGAGGCGCAACATGGAACAACGTCGACTTTCGTGTGAAGCATGTGGCCTTCGTCGATCCGACCACCAATCAGGTGTACGGGTTGGGATCAAAGACGGCGTACCTTCGAAACAAGGCTGGTAAATGGCAGACCATCACCATGGCAACCTACGACACTGCTAAAGCCTTGAGTACTTCCGTTCATGGCAAGAGCGCTGACCACCTGGGAAATTATGAAGGGATGCCCGCCAATCCGGAGACTGCCGATCGCCTGACTGCCAGCGACTCGTCCATTTGGGGAGgGGGGTACTGGCTGGACCCCCCCTTGATCCGCCGCAGCCACTGGTCAAGGAATACACATGTCTCTGGATACAGGGAACACCTGGGAGCTAAAGGCTTCTTGGCATTGCAAAGATCCTGTTGCCTGAGCGTTGGTTGAGCGAAGAATGCATTTATATAGTAGTATGAGAAAAATCAGGAAAGCCTCGTCCAGTTAAAACTCTTTAAAAAATTGCTTTGTGCACAGATTCAAAATGAGCTTCTTTGTGCTTGTGAATCGAATCGGTTTCCAGTTaagataaaataaactttGACTAAGATGATGGGAAACCAGAATACCGTTATAGTAGGTGTACGATTGTTATAAGTACTCTTGTATTGTCTAGTTGCATGTAAGTATTTTAGTATATTGTATAATGTatcaaatatcgatacaaACATAATAACAACGACAAAGGGCTATGCCCTGAAAGATAACATTACAACGGCAGCCAACTTTTGTAATCAGCCAATTTTTATAATGGTGAGGAGATCAGATTTCTCTTTATCACATTTTCTGTTACCACTGCCTTTAAAACAAGACTTATCAATCTTAATATAATTTTCTGAGGCCATGCACGCTTTAGGAAAAATGCATGTGCATGTGATAATTTTCCAAGCAAAGAATTCACTAAAAAGTTGTAATTGACCCAAGCATTATTCAAGCGGGGGTAATGTGCTGATCCTGAGTATTAGAGGTCGCGATGACGGAATATTACTCGCAATAATGGAAGAAAAGCTCGGAgaatatttacaatatttaaGCGTATGTCTCATCGGGCTGGAGAGAAGGGGGAAGGGAAAATAAATTGACGCCATATATAGCCATATATAAGGCCACAAGCCAATTATATTGTCTAAAGCGAAGAGGGTTGGTTAAAAGCAAAACGAAATGTAAGAAGAAACAGTGggtcttaataaaaaaataccacaTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12259	Coagulation factor V OS=Homo sapiens OX=9606 GN=F5 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005611 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR036278 all species →	Homologous_superfamily	Sialidase superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24543 all species →	MULTICOPPER OXIDASE-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_032234041.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032234041.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234041.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

8.6Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	3.67	4.98
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.45	6.17
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.19	2.32
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.84	3.19
whole 6 week old aboral regenerate · regenerate uncut	3	3	7.59	8.64
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.18	3.51
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.24	5.44
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.47	3.17
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.28	2.04
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.08	1.75
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.22	2.99
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.19	3.68
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	1.82	2.75
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.96	2.88
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.88	3.25
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.87	2.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.98
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.22
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.82
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.17
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.67
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.51
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.32
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.14
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.10
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.19
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.02
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.29
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.64
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.21
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.91
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.51
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.03
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.44
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.28
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.17
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.23
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.04
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.81
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.75
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.48
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.99
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.24
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.42
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.68
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.90
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.75
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.70
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.88
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.25
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.40
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.60
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.