Gene detail

Detailed information of XP_032234099.2 in Nematostella vectensis

Genomic Location: NC_064037.1:5921919...5936453
NR annotation: XP_032234099.2, transmembrane protein 214-B [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509315

ATGATGCTTTGCGAAGACGGTTTTGTGCAAGAGTTCAAAATGGCTTCCGCCGGTAAATGGGAAGTGGTTGGAAAAGGAGGGAAAAAGAGGCAGCATAATGACAAAAAGAAAGAAAAATTTTCATCAGCAGATGCTCCAAAGCTAGACGTTGCAAGCCCTGTCCCAGAGGCAGAAACTATCTACCAAGCATTTGACATCCATGACAAAAAGCAACAGAACAAGAACAATCACTTTGATCCTTATGCAGAAGCCAGCAATGACAATGAATCACAGAAAAACCAGGAACCCAAGAAAACTGTGATCAAGAAAAAAGCTCCCCCTCCCAAGCCTCCCAAACCAGAGCAACAGCAGCTGGAAGAGGCTCTACAGAAGGTTGAGCTTGACCAGCTGAGAAACATCCTAGCCAAGGACCAAGAAGCCTTTCCTAACAACCCGTCACTTTGGTTGAAGGATCTAGCATCATACATTCATCTCCATCTCCAAAATGTCCCTGAGAGAGACCCTGTGTTTGAAGACAAGCCCAAAGACTATCCCATGTGCCTTCTCAAAAAGGATGTCAAGGGGGTCCTTATGAATGCTCTGAAGAAATCTTCAGAGACAACGTTAGAAATCTTCTTTCAGTACTGCATGAATGAGATGGTGCAAGAAATGAGCAGAGGGCATTCAGTCTATGGCCTTCAGTTGATGATCCAATGTGCAGTCTGTAGCAGTCCTACACTGACAGTGTCCAAAGTAGATGAGTATGAAGATATGTTGATTGGAAGGAAAAGTCGCCCTAAGGAGGCACTAGCTATCATGTGGGCTCTAGGTCAACTCCCCAACAACAACCCAACTCAAGGAATGGCAGTGTGGTTGAGGGTCATGATGCCTGTGCTTAGCACCAAACAACTTGCCAAATACGCTATCTCCTACTTGGAGGATACCCTCAGCCTATGTGATACAAGGTCATTGCCCAGAGTTCTAGCTGCACAAGACTTCCTTGCAATCATGCACATCACTTTTGCATCCAATTCACCCCTGACAGGAAATCACAGTCTGCAGAGAAAAATGTTATCAATGTACCCCAAACTAAAGGCAATGACATTTGCAAGTGACCCTGCTTCATGTGGCCAGGCATACTTCCTTCACTTGCTTGCTCTACTGGGAGGAGAGGACCTTACGGTTGAACACTTGACTGAGGTCCTGGACTGTCTGACCTACTGCCTGGAAAAGGATGCAGCCAGCTTTTCTCTGTGGGTGGAGCACTACCCCACAACATTAAATGAGTCAAGCGTTTTACTCTATCACATCATCGATACGTGGAACACAAGAGCAAATAAGGTCAACAAGGAAAAGGTGCACCAGGCTGTAACCAGCTTTCAAGTTTTTAACAGTCTCGAGACGTCCAAAGGCAAGCAGCTGCCGGGACTAGAGAACTGCATCACAGCCTGCAGGGTTGTGGAGGAGAAAAGCCAGCAGTCATCATGCTTTTCGGTCCGCTGTCTCCTCAAGCTGCTCATGCTCCTCTTGATCGCCGCTGTCTCGTATGACGTGTGCAGGCATGGCGGTTACCAAGGCAGCAAGACGGCGCGCTTCGCTCAAGAGTATGGAATCGAACAGGGAACAATCAAAGCCTATGGTCATGTCAAACACGCCTTCGATAAGGGAAATAGTTGGGTGCAAGAGAACTACCCCACTTACTACAGCAAGTTTCGCGAGTACGCGGACCCAGCCGGACAATACGCCATGGACAAGCTTACCCTAGCAGGACAGTTCATCGAGGAGCAGTCCAGACCAGCGCGTGCCTACCTGAACAAGAAAGTACCAGAGCTTCTAGAAAGGGTCGAAAAGGAGGCCCCGGTGTACTGGGCGATAGTGCACAGTCACGTGATGCACTGGTGGAATGTGGTGTGGCCGCCCACGCGGTACTATCTCATGATCGTCTGGGCGTTCCTACACGAGCACGTGCCGCCACTCATTGCTAATATACAGGCACTAGTGTTAGACCTCGCGCATAAAATCTACCTACTCGCCCCAGACTTCTTTAACTCAGTGGCCGCGTCGCTGGAGAGCCTGGGCCAGAAGATAGTTGAGAGGTTCCCGGATGTCGTTGCTGTTGTCCAGGAATACGCGGTCATCGCTTCAAACTTGGTCATGAACCTCGTCAACAACGTTATTGCGTGGTTACAGTCTGCGGCCGCTAGTAATGAGGACATTCCAGTTACTAATCAGAAGCCCTTCCCGAAATAA

Transcript

rna-XM_032378208.2

tttcccatgatgctttgcGAAGACGGTTTTGTGCAAGAGTTCAAAATGGCTTCCGCCGGTAAATGGGAAGTGGTTGGAAAAGGAGGGAAAAAGAGGCAGCATAAtgacaaaaagaaagaaaaattttCATCAGCAGATGCTCCAAAGCTAGACGTTGCAAGCCCTGTCCCAGAGGCAGAAACTATCTACCAAGCATTTGACATCCATGACAAAAAGCAACAGAACAAGAACAATCACTTTGATCCTTATGCAGAAGCCAGCAATGACAATGAATCACAGAAAAACCAGGAACCCAAGAAAACTGTGATCAAGAAAAAAGCTCCCCCTCCCAAGCCTCCCAAACCAGAGCAACAGCAGCTGGAAGAGGCTCTACAGAAGGTTGAGCTTGACCAGCTGAGAAACATCCTAGCCAAGGACCAAGAAGCCTTTCCTAACAACCCGTCACTTTGGTTGAAGGATCTAGCATCATACATTCATCTCCATCTCCAAAATGTCCCTGAGAGAGACCCTGTGTTTGAAGACAAGCCCAAAGACTATCCCATGTGCCTTCTCAAAAAGGATGTCAAGGGGGTCCTTATGAATGCTCTGAAGAAATCTTCAGAGACAACGTTAGAAATCTTCTTTCAGTACTGCATGAATGAGATGGTGCAAGAAATGAGCAGAGGGCATTCAGTCTATGGCCTTCAGTTGATGATCCAATGTGCAGTCTGTAGCAGTCCTACACTGACAGTGTCCAAAGTAGATGAGTATGAAGATATGTTGATTGGAAGGAAAAGTCGCCCTAAGGAGGCACTAGCTATCATGTGGGCTCTAGGTCAACTCCCCAACAACAACCCAACTCAAGGAATGGCAGTGTGGTTGAGGGTCATGATGCCTGTGCTTAGCACCAAACAACTTGCCAAATACGCTATCTCCTACTTGGAGGATACCCTCAGCCTATGTGATACAAGGTCATTGCCCAGAGTTCTAGCTGCACAAGACTTCCTTGCAATCATGCACATCACTTTTGCATCCAATTCACCCCTGACAGGAAATCACAGtcTGCAGAGAAAAATGTTATCAATGTACCCCAAACTAAAGGCAATGACATTTGCAAGTGACCCTGCTTCATGTGGCCAGGCATACTTCCTTCACTTGCTTGCTCTACTGGGAGGAGAGGACCTTACGGTTGAACACTTGACTGAGGTCCTGGACTGTCTGACCTACTGCCTGGAAAAGGATGCAGCCAGCTTTTCTCTGTGGGTGGAGCACTACCCCACAACATTAAATGAGTCAAGCGTTTTACTCTATCACATCATCGATACGTGGAACACAAGAGCAAATAAGGTCAACAAGGAAAAGGTGCACCAGGCTGTAACCAGCTTTCAAGTTTTTAACAGTCTCGAGACGTCCAAAGGCAAGCAGCTGCCGGGACTAGAGAACTGCATCACAGCCTGCAGGGTTGTGGAGGAGAAAAGCCAGCAGTCATCATGCTTTTCGGTCCGCTGTCTCCTCAAGCTGCTCATGCTCCTCTTGATCGCCGCTGTCTCGTATGACGTGTGCAGGCATGGCGGTTACCAAGGCAGCAAGACGGCGCGCTTCGCTCAAGAGTATGGAATCGAACAGGGAACAATCAAAGCCTATGGTCATGTCAAACACGCCTTCGATAAGGGAAATAGTTGGGTGCAAGAGAACTACCCCACTTACTACAGCAAGTTTCGCGAGTACGCGGACCCAGCCGGACAATACGCCATGGACAAGCTTACCCTAGCAGGACAGTTCATCGAGGAGCAGTCCAGACCAGCGCGTGCCTACCTGAACAAGAAAGTACCAGAGCTTCTAGAAAGGGTCGAAAAGGAGGCCCCGGTGTACTGGGCGATAGTGCACAGTCACGTGATGCACTGGTGGAATGTGGTGTGGCCGCCCACGCGGTACTATCTCATGATCGTCTGGGCGTTCCTACACGAGCACGTGCCGCCACTCATTGCTAATATACAGGCACTAGTGTTAGACCTCGCGCATAAAATCTACCTACTCGCCCCAGACTTCTTTAACTCAGTGGCCGCGTCGCTGGAGAGCCTGGGCCAGAAGATAGTTGAGAGGTTCCCGGATGTCGTTGCTGTTGTCCAGGAATACGCGGTCATCGCTTCAAACTTGGTCATGAACCTCGTCAACAACGTTATTGCGTGGTTACAGTCTGCGGCCGCTAGtaatgAGGACATTCCAGTTACTAATCAGAAGCCCTTCCCGAAATAACCTCGAAGGACTCTAGGAACAATTCAAATCCGAGACGCGGTCGAAGCCAAGAGCACACCTGGTCTCCAAGCCACGCACGATGACTCTACCTCCTACTCCTGAAATTCCATAACTCAAATAGAGTGACACAATTGCTGACTTCAATACTGACGTTAGAGAACTGCATCTTATGCGCAATTGCTGACTTTAATAATGACTTTAGAGAACTGCATCTTATGCGCAATTGCTGACTTTAATAATGACTTTAGAGAACTGCATCTTATGCGCAATTGCTGACTCTAATAGTGACTTTAGAGAACTGCATCTTGCGCAATTGCTGACTTCAATACTGACGTTAGAGAACTATTTCTTGCGCAATTGCTGACTTCAATACTGACGTTAGAGAACTATTTCTTGCGCAATCGCTGACTTCAATACTGACGTTAGAGAACTACATCTTGCGATATGCGTTGTGTTACATAACAAAACAGCTCATCGCATTCCATTGCATAGGGTATAACACATGAAAAAAATGCTATGGTATTCAGTCTGGATTCAGTCGATCTTCCATGCTTACTGCGTACGTCAGTCGCACTTTTACCAAATAATCATGCGAACCACACACACAACTATGcgttgtttgtgtttttatgtGCGCACTTTAAACACACAGCCTTTGCAACAGATTATTCAGATACTTTATTGACAATAAAAGGTTTTCAGaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L2I9	Transmembrane protein 214-B OS=Xenopus laevis OX=8355 GN=tmem214-b PE=2 SV=1
A0JMW6	Transmembrane protein 214-A OS=Xenopus laevis OX=8355 GN=tmem214-a PE=2 SV=1
A4FV45	Transmembrane protein 214 OS=Bos taurus OX=9913 GN=TMEM214 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004712 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10151 all species →	TMEM214	TMEM214, C-terminal, caspase 4 activator	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019308 all species →	Family	Transmembrane protein 214	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13448 all species →	TRANSMEMBRANE PROTEIN 214	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032234099.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234099.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

26.8Max TPM

17.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	24.73	26.75
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	20.08	26.44
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	15.82	16.48
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	17.67	19.72
whole 6 week old aboral regenerate · regenerate uncut	3	3	16.69	18.29
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.83	19.43
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	24.80	26.55
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	16.84	19.20
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	18.86	20.22
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	15.88	17.84
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	18.26	19.50
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	13.65	20.57
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	19.81	22.63
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	14.81	22.84
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	21.91	24.33
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	14.15	22.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	26.75
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	24.64
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	22.80
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	26.44
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	17.91
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	15.88
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	16.48
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.61
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.36
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.72
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.74
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.54
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	18.29
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	17.33
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.46
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	19.43
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	19.06
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	26.55
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	25.39
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	22.48
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	19.20
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.33
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.99
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	20.22
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.98
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	17.39
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.84
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.09
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.70
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.50
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.26
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.03
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	20.57
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	20.37
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	22.63
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	18.82
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.98
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	22.84
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	21.59
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	24.33
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	21.78
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.62
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	22.41
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	20.05
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.