Gene detail

Detailed information of XP_032234162.2 in Nematostella vectensis

Genomic Location: NC_064037.1:6021667...6024657
NR annotation: XP_032234162.2, protein spire homolog 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032378271.2

GTCTAGCATGAATCATTCATGGTTGCTTTTGGCTTTTGGATAGCAGCACGGGTTTTCACAAGCTTCCTGAATAAATTATTTAGTCTGAGCCCACACATCAAATGAGGGAGGACGCGACATTCTACGCACgtagaaaatcaaaattataGACCTGAAAATCGAACCTTTTTCACCATGCAACTATAGTGCTATGGAGTCTATGAGTATTTATGAAATTCTGAAAAATTTTCGGGCGCCTCTGAGCGAGGAGCAAGCATGGGCCGTTTGCTATCAATGCACCAGAGAATTGGTATCGCAACGCGAAACTGGTTTCCAAACCTTTCAGAAGAACATAATTGACATTCAACTCTCGACCACCAAGATTTTGAAAGATGGCTCTGTTGAGTTCACGAGTATTTCGCCTACTGAAACGCCGCAAAAGGAGAATGAAGTTTTGTTTCGGCTTGGTAGTTTGGTGTATGAGTGTTTAGACTTCGGTATGGAGGTTTGTATGGAGAGAGAGCTTGACCCAGCGCTAGAGAAACTTATAACCGAGATGACGTGCGAGCAGGGAGACGAGGGGATTTCTGTGCCGGAATACTGTGACGATAAACACACAGGAATACGGGGAACGAGTCCTCCGAAAAAGGAAAGACGCTTATCCAGCAAAGGGGTTTCATCTAAAGACATGAGTTTAGAAAGGGTTTTGCAAAGCTGTACGGAACATTTAGCCGGCGACCAGGCAAAATCGCAAGTCCACTTTAAAGCGGTTTGTCGTGCACTTGTCAATGAAGCTATTGAACTGACTGCTTTTCTCAACCACCTTTATAACGGTCATGAACTTATGGCGCAGACCTCAGGGCAAGGGGTTGGACTTACAAACTGGGCATATCTGCAAAGCCTGCACGCAGCGGAATGGGCACAGTTATGGTTGCAAGCAATGAGAGAGCTGAGACAGGGGGTTACATTAAGGCATGTTGTACATAACAAACTACCGCCGGCTTCGTTTGAGATGACGCCGTTCGAAATGCTGTTGGATGATATACGTTATCGCCGGTTTAACCTGAATCATGTGTCCATTCAGCAGAATACTCTGAATAAATCGAAAGATGCGCACGATGTGATATTGGACTTTATCCGCTCTAGACCACCTCTGGCTAGAGTTTCTGAGAGGAAAATGAACCCTGTTGCAGAAAACAGCCCTAATTTACACGACAAACTCTTGACGGAAATCAAAAGCTGTAAGAAATTAAAACCTACACCGCAGCCGGTGCTGAAAACAGTGCAGGAAATTTACTACGGCGAAGATTTGAATCTCGTTCCAAATGATATCTCCGCATCTGTCACTCACAAACGACGACGCCTAAAACCAGATTTGGAGTTTGTGGAAAAAATCAGTCGATGGGACTCGCCAACGCCAGATTCTTCCCCTGAGGAAAAGCAGATACCAAGATCGTCTGTGGTAGAAATCAAATCTGTTAGAAGCCGAAGTCTACCTACGTCTCCTCGCGCAGAGCTTTTTGAGCAATTTGACAGCGTTGCGGACGTCAAGCAGTTCGATTCGTCTAGATCGAGTGGTTTCTACGAGCCGGGCTCGAGCCAGTCAAGCTTAGACTCAGTGGAGGATAATAGTTGTGTGAGGAATGGAAAATTTAGTGGGAATTATACGCTTGGGTTTGATGACAACCCCATTTTCCCGCCCTCCCTACGAAACCTTCAAAATATGAAGGTGACTGCAAAGATCTATATGACATTGAATGAAGTCAGGCACATGTGCAAAACGCTCGCGATGCTTGAGCTTGAAAACTTTGATCCTGATGATCCAACATACCGCAGCCTGATCTCGGGCCAATTGTGCTTCTGTTGCCGCAAAAGGAAGTTCTCCTTATTTGGTGAATGGTCGCGACCATGTTACATATGCGAGAGCTGCGTTTGCTCGCACTGTCTACACAAAGTGGAGACGTCATCTAGTTACGTATTCATGGAGAATGAGTGCACCAATAAGAGAGATTCTGGGTTCTGTGACTCATCGCCGTATTTTCCTGTGTGTGCTAGCTCAATGCCTAATTCATTCAGTTCGCCAGCGCTGACGACTCATTGCATGCCAACAAAAACACATCGAGTCTGCTTAACTTGCAAGAGGTTCATCAGTAAGCACTGTTAGTGGTCCCAGCATGTGGACGAGCCTTGGGGGACCCCTAAAATGTGAGACGCTGTGAATGGTGTTGTTTGTGATAATTAAAGTAAGGGAGCTTATGTACTTGTTGGTGGGTGGATAAAAGGAGGTAGTACCGGTTAAAGGATTTTTAATATCATATCGTTGGATCCCCATCGGGTGTTTACGTCACTCTATGCGTAAGGGGTCCTCCATTTGGCTTACGATATTACCGCCAATTAGAATGTAGAATCGTGATCAGTAGGAGAGAAGtgttatagaaaacaattatatatatttaattaCTAAAAGAGTGAATGaatattttgtaatttctatCAAGCGTAGTTAGTATATGTGCTTATTTGGATGCAAATATTCAGTGTCTAGCATTTTTGCTGTTATAGCTTAGATGGTTTGCGATTGGTTTGAGAAATTTCATGCAGACATAACTTATTTACATCTTGGTACTTTtcgtttttcattttctttcaaTCGTGGATGTctgggaaaaaaataatagacaGAATCTAATCAATATTTCGCCTTGGGCAATTCTCAATATCGCGCGTCTAAATCATGAAAATAAATTTCAGTTTCAAAAAGGATTTTATGTGAAATCATATCAGATATACAAAAGTGCTTTCAATAATTTATCTTCTTGTGATAAGCATACTTTGCTCGTGTGTTTTCTTCCTACTGCAAAGAGCCATTTGAATTCTAGTACTTGATCGTATTTGCCCTGTAGGCACTAACTCATTCGCTGTAAATAGGCGCAGTATTTCGCTAACGTAGCTGGCAGGGTATATCTGTACGCATCTATACATAATgtaaaaagaataaaacattttttgata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K1S6	Protein spire homolog 2 OS=Mus musculus OX=10090 GN=Spire2 PE=1 SV=1
Q8WWL2	Protein spire homolog 2 OS=Homo sapiens OX=9606 GN=SPIRE2 PE=1 SV=3
Q1LYM3	Protein spire homolog 1 OS=Danio rerio OX=7955 GN=spire1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009142 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16474 all species →	KIND	Kinase non-catalytic C-lobe domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029901 all species →	Family	Protein Spire	Interproscan
IPR011019 all species →	Domain	KIND domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21345 all species →	SPIRE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0030659 all species →	Cellular Component	cytoplasmic vesicle membrane	Interproscan
GO:0036089 all species →	Biological Process	cleavage furrow formation	Interproscan
GO:0040038 all species →	Biological Process	polar body extrusion after meiotic divisions	Interproscan
GO:0045010 all species →	Biological Process	actin nucleation	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:0051295 all species →	Biological Process	establishment of meiotic spindle localization	Interproscan
GO:0051639 all species →	Biological Process	actin filament network formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02098	SPIR; spire	-	Dorso-ventral axis formation	ko04320	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234162.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

4.5Max TPM

0.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	0.73	0.97
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	0.66	1.20
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.10	1.37
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.21	1.62
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.21	1.52
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.09	4.50
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	1.95	4.42
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	0.66	0.90
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	1.00	1.13
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	0.99	1.24
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	0.86	1.11
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.44	0.75
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.41	0.63
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.23	0.68
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	1.09	1.20
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.36	1.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.97
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.67
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.55
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.20
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.51
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.27
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.37
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.09
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.83
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.62
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.12
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.89
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.52
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.07
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.04
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.50
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.77
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.42
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.82
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.62
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.90
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.63
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.45
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.13
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.96
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.89
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.24
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.91
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.80
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.11
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.81
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.66
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.75
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.57
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.63
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.59
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.68
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.20
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.08
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.98
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.07
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.