Gene detail

Detailed information of XP_032234196.2 in Nematostella vectensis

Genomic Location: NC_064036.1:18228378...18235629
NR annotation: XP_032234196.2, protein aurora borealis [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509365

ATGACTGACAGCATGAGTTACTCTGTTTCCTCGCTCGAGGTGACACGAAATCCGTTCGAGAGCGACCATGAAGATAGACTCCACTTCCCTGGCTTCAGTCCGTCTATGTTTACAACGCCAAGGACCCCGATCAGTGAGAAGCGAAAACCTAAAGAGTTTCGTTGGTCTATCGATCAAATATCTGTTCTTCGCCCGGCTGATATTGATGAATTCCCAAACCAAGAAACAAGCAGCACCCTGGAAAGAGAACATGAGGTCCAACTTGCAGTTGATGAGTATTTCTCTCAAGATGCAATTGTTCCATCACCTTGGACACCAAATAGATCAGTAAAGCATGTCACCTTTTCACCCCTACCACCCCATACAAAATATATTCCAAATGATAGCTCAATGAATTCATCTAGCAACTCGCAGATTGATAGTCTGAGGACGGCACCACCTAAACTTTGTGCTGATGTTTCAGTTCAAACAGACCTTTGTTTGCCCATTGACTTTGACCTGGAAGAAGTGCTAGGGCAAGTGTTTTACAATGGCAATGAGGCTGGGGAAAGGGAACTATCCATATCTTCCCTCCGTCGCAAATTGTTCCCCCAAGGGGATGGTATGACCAACCAAGACCACAACAATAATACCCCACACACAGATGAAGTGCAGAAAATCAGATCCATTCTGAAGCATCCGAAGAGCCCTCTGGTTACATCCAGTCCTATGGGATGCAAGGACCGCCAACAACCCCATGACTCCACCCACTGTAGATCATCAAGCCCCGATGTCTCCCCCATCAAGACCTCACGCTACTCCCTAGCACTCTATACCAGCCCCATGTGTCTGACCCAAGTGCTGGAGTCATCAGGGGTGGATATAGCCAATGAACTGGACATGTTTCCTGATATCTCCCCCATCAAGGATTATGATAATAACCCACACAATCAGTCAAAGACAGGGCAACACAGGAATGTCTCTATGGATGGGGGTCCATTAGAGCTGTCCGCTCTGACCGTGTCTGATGAAGAGAGCGAATCGGACCCGCCGGCCAAAGTGACCATGGAAGACCTAGCAAACACAGAGAGTGAAGACGAGATACCAGCGAAGGTAACGATGGAAGATCTTACAGTTGATGTTGAAGAAGACGACGACGGCGAGAAAAAACCTGCTCTCGTAACGATGGAGGATTTAGCGATGGATGATACATCGCAGATAGATAATTCAAGACAGGAAGATATCGAGGATATGGAAACATCATCGATACAGCAGTCTGTTAATCTTCCTCAGGAAGAGGGAGTGTTGAATGGGGGAAAGAAAGCGGAAAAAGAACAACAGCTTAAAATTGGAAAGAATGAAGCGATTAGTTTATTTAAACCACCATCGACATACATTGCAGGTTCACATATAACAGCATTTGCGACACAAAATCATGGAAATGCCAAACATAAGACTTTTGAAGCTGATGATGAAGTTTTGATAGTCAGAGCCAATGCAGCTTTGCGTCGTGCTAACCGTTTCTCTCCACTTAGCTCTCTAGATAGCGATTATGCTACATTTAATGCAGACATAAACAAATTAAAAACTCAGTCAGGATTGGACAATGACATCTCATGGCGTCCTGTCAGTATGTCAACCCCTCTTTGTCCACCCGTGAGAAGACCTAGAGTGTTTGGGAGCTCCACTTTGGAGTGTGACTATTGCCCTGAAGGGAGTACTGATCGGTTAATGTCATTCAAGCGGCTAGCTGAATTGCCACACACAAATGAACTAGGGTACACACCAAGCACTACTGATCACCATGGTAACCGGAGACAGCCTGCGATTGAGGACATTATAAGAAGAAACGAACTGCTCAAAGAGGGGCTCCGAGAAGCCTCGACTCCAACCTATTCATCTGTGCAGTTTGGTAAATGGAGGGTTCCCCGTACTTACCCCTTGTCGTACATGGAGAGAAAGGCCTTGTATGGCAAACCAGTAAGCAAAGCTGTTGAGAGCATTGAGTCACTTGCACCCCGCCTTTATTCCGACTCTAAAAGAGTATCATGGCCCCCATCTAGACCCTTTTCAACCAGGACCAGCTACCACAACAACAGACCAGTGTCCCCGCCCTCTTCATGGCTGAGCCATGATCATGTTTACAAGGTGTACCCAGATGGCATTGTATCAAAAATGCCAATCCCAGCATTGTACAGGTCAAGGGAGATTGATAGTGGCTTTGAGGACTGGAAGAAAAGTATAAGTCGATGGGAACTATCTATAAAAACACAAACAAGTAGACTGAAATATTCATAG

Transcript

rna-XM_032378305.2

AGCggcaaattcaaaattttCAAATTGTGTCCAGTTCAAAAGTTATCATTTAGACTTAACACGAAAGTATTTATCTCTCTTTATCGCCTTTTTATGGGTTACTAATATAACCCATCTCCGTACTTATGCAGAGTCGTTCAGTATGACTGACAGCATGAGTTACTCTGTTTCCTCGCTCGAGGTGACACGAAATCCGTTCGAGAGCGACCATGAAGATAGACTCCACTTCCCTGGCTTCAGTCCGTCTATGTTTACAACGCCAAGGACCCCGATCAGTGAGAAGCGAAAACCTAAAGAGTTTCGTTGGTCTATCGATCAAATATCTGTTCTTCGCCCGGCTGATATTGATGAATTCCCAAACCAAGAAACAAGCAGCACCCTGGAAAGAGAACATGAGGTCCAACTTGCAGTTGATGAGTATTTCTCTCAAGATGCAATTGTTCCATCACCTTGGACACCAAATAGATCAGTAAAGCATGTCACCTTTTCACCCCTACCACCCCATACAAAATATATTCCAAATGATAGCTCAATGAATTCATCTAGCAACTCGCAGATTGATAGTCTGAGGACGGCACCACCTAAACTTTGTGCTGATGTTTCAGTTCAAACAGACCTTTGTTTGCCCATTGACTTTGACCTGGAAGAAGTGCTAGGGCAAGTGTTTTACAATGGCAATGAGGCTGGGGAAAGGGAACTATCCATATCTTCCCTCCGTCGCAAATTGTTCCCCCAAGGGGATGGTATGACCAACCAAGACCACAACAATAATACCCCACACACAGATGAAGTGCAGAAAATCAGATCCATTCTGAAGCATCCGAAGAGCCCTCTGGTTACATCCAGTCCTATGGGATGCAAGGACCGCCAACAACCCCATGACTCCACCCACTGTAGATCATCAAGCCCCGATGTCTCCCCCATCAAGACCTCACGCTACTCCCTAGCACTCTATACCAGCCCCATGTGTCTGACCCAAGTGCTGGAGTCATCAGGGGTGGATATAGCCAATGAACTGGACATGTTTCCTGATATCTCCCCCATCAAGGATTATGATAATAACCCACACAATCAGTCAAAGACAGGGCAACACAGGAATGTCTCTATGGATGGGGGTCCATTAGAGCTGTCCGCTCTGACCGTGTCTGATGAAGAGAGCGAATCGGACCCGCCGGCCAAAGTGACCATGGAAGACCTAGCAAACACAGAGAGTGAAGACGAGATACCAGCGAAGGTAACGATGGAAGATCTTACAGTTGATGTTGAAGAAGACGACGACGGCGAGAAAAAACCTGCTCTCGTAACGATGGAGGATTTAGCGATGGATGATACATCGCAGATAGATAATTCAAGACAGGAAGATATCGAGGATATGGAAACATCATCGATACAGCAGTCTGTTAATCTTCCTCAGGAAGAGGGAGTGTTGAATGGGGGAAAGAAAGCGGAAAAAGAACAACAGCTTAAAATTGGAAAGAATGAAGCGATTAGTTTATTTAAACCACCATCGACATACATTGCAGGTTCACATATAACAGCATTTGCGACACAAAATCATGGAAATGCCAAACATAAGACTTTTGAAGCTGATGATGAAGTTTTGATAGTCAGAGCCAATGCAGCTTTGCGTCGTGCTAACCGTTTCTCTCCACTTAGCTCTCTAGATAGCGATTATGCTACATTTAATGCAGacataaacaaattaaaaactcAGTCAGGATTGGACAATGACATCTCATGGCGTCCTGTCAGTATGTCAACCCCTCTTTGTCCACCCGTGAGAAGACCTAGAGTGTTTGGGAGCTCCACTTTGGAGTGTGACTATTGCCCTGAAGGGAGTACTGATCGGTTAATGTCATTCAAGCGGCTAGCTGAATTGCCACACACAAATGAACTAGGGTACACACCAAGCACTACTGATCACCATGGTAACCGGAGACAGCCTGCGATTGAGGACATTATAAGAAGAAACGAACTGCTCAAAGAGGGGCTCCGAGAAGCCTCGACTCCAACCTATTCATCTGTGCAGTTTGGTAAATGGAGGGTTCCCCGTACTTACCCCTTGTCGTACATGGAGAGAAAGGCCTTGTATGGCAAACCAGTAAGCAAAGCTGTTGAGAGCATTGAGTCACTTGCACCCCGCCTTTATTCCGACTCTAAAAGAGTATCATGGCCCCCATCTAGACCCTTTTCAACCAGGACCAGCTACCACAACAACAGACCAGTGTCCCCGCCCTCTTCATGGCTGAGCCATGATCATGTTTACAAGGTGTACCCAGATGGCATTGTATCAAAAATGCCAATCCCAGCATTGTACAGGTCAAGGGAGATTGATAGTGGCTTTGAGGACTGGAAGAAAAGTATAAGTCGATGGGAACTATctataaaaacacaaacaagtaGACTGAAATATTCATAGAGTTTAATGTGTTTCTTCATAAAATACACATGTAAATTGCTGTACTGTATGTACTCTTCTAATGAGAGTGGGAAATCTTACCATGATCTGTTGAACTTATATTCCATAGAAATTTGAGTGCAGGCTTGTTTTTGCCAGCTGTAATAAAGCAGTATTATTCAGCATGCCCTTGTAAACAGTAAGTATTATTCAGCATGCCCTTGTACACAGTAAGTATTATTCAGCATGCCCTTGTACACAGTAAGTATAATTCAGCATGCCCTTGTACACAGTAAGTTTTATTTAGTCTTCATTTCAGCCCTTGTAACATTTTATTGTGCTTGAGATCCAATAGTGCTGCATAAGCTATAGGTTTTATAACTTGTGAGAAGACTTTGTTTTAATCAAGATTTAAGAACCAGATGCCATATTGTAGGAATAAGAGGTATAAGCAGACTGCATGTTATCCATTTGTTGTTTGGATATATTCAGGTATCTTATCATTTGATCACATTAAAGTACCACCTGTTTGTCTATGTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M864	Protein aurora borealis OS=Rattus norvegicus OX=10116 GN=Bora PE=2 SV=1
Q8BS90	Protein aurora borealis OS=Mus musculus OX=10090 GN=Bora PE=1 SV=1
Q6PGQ7	Protein aurora borealis OS=Homo sapiens OX=9606 GN=BORA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004467 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15280 all species →	BORA_N	Protein aurora borealis N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023252 all species →	Family	Aurora borealis protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14728 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007088 all species →	Biological Process	regulation of mitotic nuclear division	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0032147 all species →	Biological Process	activation of protein kinase activity	Interproscan
GO:0060236 all species →	Biological Process	regulation of mitotic spindle organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032234196.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234196.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

7.3Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	3.72	6.51
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.00	4.42
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.99	2.02
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.26	2.70
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.67	3.37
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	1.39	2.47
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.95	4.54
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.07	7.26
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.28	1.99
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.21	1.86
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.83	2.18
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.25	4.94
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.22	4.85
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.45	4.35
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.53	2.77
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.94	2.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.51
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.66
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.42
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.43
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.16
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.02
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.99
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.97
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.70
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.22
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.85
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.37
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.77
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.86
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.47
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.70
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.54
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.31
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.26
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.69
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.26
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.99
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.85
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.86
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.78
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.18
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.66
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.66
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.94
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.80
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.85
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.05
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.77
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.35
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.77
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.81
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.83
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.