Genomic Location: NC_064043.1:14566056...14575883
NR annotation: XP_001629936.2, uncharacterized protein LOC5509437 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5509437 |
| Transcript |
| rna-XM_032378345.2 |
| Protein |
| XP_032234236.2 |
| UniProt accession | Description |
|---|---|
| Q62165 | Dystroglycan 1 OS=Mus musculus OX=10090 GN=Dag1 PE=1 SV=4 |
| Q28685 | Dystroglycan 1 OS=Oryctolagus cuniculus OX=9986 GN=DAG1 PE=1 SV=1 |
| Q9TSZ6 | Dystroglycan 1 OS=Canis lupus familiaris OX=9615 GN=DAG1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002155 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05345 all species → | He_PIG | Putative Ig domain | Domain | Interproscan |
| PF18424 all species → | a_DG1_N2 | Alpha-Dystroglycan N-terminal domain 2 | Domain | Interproscan |
| PF05454 all species → | DAG1 | Dystroglycan (Dystrophin-associated glycoprotein 1) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR030398 all species → | Domain | DG-type SEA domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR041631 all species → | Domain | Alpha-dystroglycan N-terminal domain 2 | Interproscan |
| IPR015919 all species → | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR006644 all species → | Domain | Dystroglycan-type cadherin-like | Interproscan |
| IPR027468 all species → | Homologous_superfamily | Alpha-dystroglycan domain 2 | Interproscan |
| IPR008465 all species → | Domain | Dystroglycan, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21559 all species → | DYSTROGLYCAN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0002009 all species → | Biological Process | morphogenesis of an epithelium | Interproscan |
| GO:0007411 all species → | Biological Process | axon guidance | Interproscan |
| GO:0016011 all species → | Cellular Component | dystroglycan complex | Interproscan |
| GO:0016203 all species → | Biological Process | muscle attachment | Interproscan |
| GO:0021675 all species → | Biological Process | nerve development | Interproscan |
| GO:0042383 all species → | Cellular Component | sarcolemma | Interproscan |
| GO:0043236 all species → | Molecular Function | laminin binding | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016010 all species → | Cellular Component | dystrophin-associated glycoprotein complex | Interproscan |
XP_032234236.2.Transcript abundance of XP_032234236.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
