Gene detail

Detailed information of XP_032234396.2 in Nematostella vectensis

Genomic Location: NC_064045.1:8062430...8066629
NR annotation: XP_032234393.2, G protein-activated inward rectifier potassium channel 3 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032378505.2

CCTACATGAAGTAATGACCATATGGTCTTGCATGTCAAGGAAGCGGAAATCTCTCCAAGCCCGCCAGCCCCCTAATATTGATTTCATTAGTTAGCATGGCGCATGTCAGCGACATTTACTAAGAGATTCGAGTGATAAACCGACCTTTATAAAAGCATTTGGATCTCAATCGACTATAGCGCAGGAATTACGAGTTGAGGCCACATCATTTCCGTCTTCAAGAGTCCTGCACTCCAAGTATGGCTTCGTTCGAGCTGGAGAGAGAGCAGAGAGACGAGCGCAGCGAACCGCGAAATAGCGACAGCGGAGTTCACAACACAAAATCAGAGAGCGATTATGGAGTGGAGCAAAGTCCAAAGACTGCACGGAAGTCTAAGAAACATGGCAAACTTCGCAGAGTTCTATCGAAATACAAATTACGCCTCCGTCCGAGACTTGTGGGTAAACACGGCGGACTTAAAGTGGTAGCAACCGATGTTGCCCAAAAACATGGCATGTATCTCTCTGACTTGTTCACTACAATGATTGACTCCAAGTGGCGGTGGATtagtttattatttataaccGCGTATACGGGAAGCTGGATGGGGTTTGGATGCGTTTGGTACCTGATCACCTATTTACGAGGAGGTAATTACTGTGTTCATAACGTCGAGTCGTTTGTGACAGCGTTCCTGTTCTCCCTGGAGACTCAGACAACCATTGGTTATGGAGGTCGGCAGATAAGTGGCGAGTGCCCTGAAGCGATCATACTACTGAATATTCAGTCTCTCTCTGGATTCCTTATAAATGCTCTGATTATGGGGTTAATTTTCGCCAAGTTATCTCGGCCTCGTAATCGAGCGGAGACGATATTGTTCTCTAAGAAAGCCCTTGTGTGTGTACGGGACGGCAAAATGTGTCTCACATTTCGTGTAGGTGACATTCGTAAGAGTCAAATCCTACACTGTCACATACGGGTCCAGCTCTTCAggactcgtaaaacaaaggaAGGACAAGTACTACCATTCTACCAACAGGACCTGAAGACCGGCATTGATTGGAATGACCAGAATTATGGGAACAATACAATATTCCTGATCCTCCCGCTAACTATAATCCACGTAATAGACGAGGAGAGCCCTTTCTTCACCATGACCCCTAAGGACCTGAGGTCATGTGATTTCGAGCTCGTGGCGATACTAGAGGGTACGGTTGAGGCCACGGGTATGTTAACACAAGCAAAGACCTCGTACATCGGGGAAGAGATCCTCTGGGGGTATGAATTCAAGAACACCCTCGACCACACAAGTTGGAAAGCGGGTCGTTTTCGAGTGAACTACTCGCACTTTGATCGGGTTGTTCCTGTGGACACGCCCCGCGTTTCCGCTTTGTCGTTTTACGAGGGTAAGGTGTGCCCTTCGTCCGGTGATTCGGACGATTCCGGGTCGGGCACTGACGTGTTTTATGAACAGGAATCCCCGGATGAGGTTTCCAGCAAAGAAATCCAGGAAATATCGATTAGACAGGATATGAATAAGAGTGAAAATGGCAGTCCTATAGTCCCGCGGGACCAACGGGATGACCCTCGGGATGACGTGCAGTTGCGGGATCGCAAGACCAGCAACTCGAAAATGAAGCAAAATGGACAGCTTAGAATGTACGAGTTTGAGAATCGCAATGTTGCGTACGACCCTGGGGACGACTCGGATATACTGTTCGTTTGAGGCTATAACTGCTGTTCTTTATGGGCCCTAAATGGTACACAGTGGATATAAAATATGAGGGGCAAGTCCTGTGGGATTTGTGAGGAAAGTGAGAACGGACCTTGATAAAGCCCCATCTACATtaacaatttttagttgacaactATATTTGTTGGCATCTACACTAGTAATTTTCATGtgtgacaatttttaattGCCGAGAGTAAAAGCAAACCTGCTAGTTTTTGAGCAACTATAGTTGCCACATAAAAATTGCAAACTTTGCTCCATCTACactagcaaataaaaattgtcaacTAAAAAATTTTAGGGTAGAATTTTACTATCATTAGGAACCTTAAGCAAGGGCGACGACGACGGCTAGGAAAACGCGATCGAAAATTAGGTTTTCGCGTTTGGAAATAAATTATAATGTAATTGGTATGGAATAAGCAGAATATTATAGTTAgagaaagataaaaataaacttaggACATTTCTACAGTAGGGAACGTAGTTAATGGAGTTTAAAGTCAATTGACGTTGAAACTTGGAGTTGGTTTTATGGAAGGCGGCTGAAATTTATCAGACAGAACATTTTCACATGCTgttattgaattctgaatcaaattccaTTTTACTTCCGTCGTCGTCCACGTTCCCGTCGTCCTTtcttaaggtccctattatcatcatcactaccgaCATCATGATTTTATCACCAATTTTATCACCGTCATGATTTTATCACCAATGATTACATCACCGACACTATGATTGCACCAACATCATGATTGCATCACTAACACTATGATTGCATCGTTATCCATCAGTCGTCATAACAGTCATAATCATCGCCACTATCATCATCCCgtcgccatcatcatctcatcaccaccatcatcatctcatcaccaccatcatcatctcatcaccaccatcatcatctcatcgccaccgtcatcatcatccttgTCATACTCTATTTAAAAACGGAAAAATACCAGGCCATATGAAATGTAAATAATTAAAGTGCTATATTGTGCTTAATGGTATTAATACTATAGCTATTTTCATAATAACGATATAGACACAGTGTGATCAGGTAGTTGTCACAGAAAGAGAATACAAACCAAAACCCGTTCTAAGAGTGCGAAatgtaaaattaaaaaatgataTTAAATGATTAAATTAATCTGTGACAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63252	Inward rectifier potassium channel 2 OS=Homo sapiens OX=9606 GN=KCNJ2 PE=1 SV=1
P63253	Inward rectifier potassium channel 2 OS=Macaca mulatta OX=9544 GN=KCNJ2 PE=2 SV=1
O19182	Inward rectifier potassium channel 2 OS=Bos taurus OX=9913 GN=KCNJ2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001013 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01007 all species →	IRK	Inward rectifier potassium channel transmembrane domain	Domain	Interproscan
PF17655 all species →	IRK_C	Inward rectifier potassium channel C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040445 all species →	Domain	Potassium channel, inwardly rectifying, transmembrane domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013518 all species →	Homologous_superfamily	Potassium channel, inwardly rectifying, Kir, cytoplasmic	Interproscan
IPR041647 all species →	Domain	Inward rectifier potassium channel, C-terminal	Interproscan
IPR016449 all species →	Family	Potassium channel, inwardly rectifying, Kir	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11767 all species →	INWARD RECTIFIER POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005242 all species →	Molecular Function	inward rectifier potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0034765 all species →	Biological Process	regulation of monoatomic ion transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05330	KCNJN; potassium inwardly-rectifying channel subfamily J, other	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234396.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

11.5Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	5.20	8.02
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	5.33	8.23
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	7.60	9.36
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	4.10	4.52
whole 6 week old aboral regenerate · regenerate uncut	3	3	4.81	5.61
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.78	5.10
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	8.49	11.45
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	5.70	8.11
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.61	4.82
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	2.49	4.08
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	3.89	4.06
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	5.36	6.21
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	8.22	11.08
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.38	7.15
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.89	7.11
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.37	4.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.02
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.38
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.20
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.23
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.09
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.68
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.36
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.07
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.38
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.52
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.99
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.79
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.61
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.49
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.33
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.10
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.23
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.45
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.92
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.11
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.11
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.79
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.19
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.82
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.01
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.08
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.39
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.06
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.01
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.60
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.21
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.40
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.49
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.08
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.15
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.44
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.15
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.11
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.57
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.10
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.