Genomic Location: NC_064045.1:4477303...4492455
NR annotation: XP_032234472.2, trinucleotide repeat-containing gene 6A protein isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5509622 |
| Transcript |
| rna-XM_032378581.2 |
| Protein |
| XP_032234472.2 |
| UniProt accession | Description |
|---|---|
| Q3UHK8 | Trinucleotide repeat-containing gene 6A protein OS=Mus musculus OX=10090 GN=Tnrc6a PE=1 SV=2 |
| Q8NDV7 | Trinucleotide repeat-containing gene 6A protein OS=Homo sapiens OX=9606 GN=TNRC6A PE=1 SV=2 |
| Q3AQP5 | Chaperone protein DnaJ OS=Chlorobium chlorochromatii (strain CaD3) OX=340177 GN=dnaJ PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008140 (this species only) |
| Ubiquitin family | UBD|Alpha-Helix|UBA · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 all species → | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00226 all species → | DnaJ | DnaJ domain | Domain | Interproscan |
| PF00627 all species → | UBA | UBA/TS-N domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001623 all species → | Domain | DnaJ domain | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR041917 all species → | Domain | Trinucleotide repeat-containing gene 6C protein, UBA domain | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR015940 all species → | Domain | Ubiquitin-associated domain | Interproscan |
| IPR009060 all species → | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR036869 all species → | Homologous_superfamily | Chaperone J-domain superfamily | Interproscan |
| IPR052068 all species → | Family | GW182 domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13020 all species → | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000932 all species → | Cellular Component | P-body | Interproscan |
| GO:0005654 all species → | Cellular Component | nucleoplasm | Interproscan |
| GO:0035195 all species → | Biological Process | miRNA-mediated post-transcriptional gene silencing | Interproscan |
| GO:0060213 all species → | Biological Process | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | Interproscan |
XP_032234472.2.Transcript abundance of XP_032234472.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
