Gene detail

Detailed information of XP_032234778.2 in Nematostella vectensis

Genomic Location: NC_064048.1:7137465...7152800
NR annotation: XP_032234778.2, protein PAT1 homolog 1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509850

ATGGCGGGCGAATCTTTTTTTGGATTCAACACGCAAATGCCATCTTTCGAAGACGAGGAATTAGAAAAACTTGACCCCACTTTGAAGAACTTGGATGATGACTATGATTTGCTTAACGAAGATACTTTTGGCTCCGGAGCACTAGAGGATGACTGGGAGATTGCGCACAAGAAGCTTGCAGGTATTGACCTTGACAAAGCAACAAATCAATCCTTAGTCAGCAAGAACGAGCACTGTCGTCAGAAAGTGGGCGTGACTGAAGATGATGATGATGATGAGGCTAACTTGGAACAGGAAGAGGAGATTCTCGAGCAGACCCTGGCTAAGTTGGTTGATGAGGATGATGATACCCCTAAGCCATACACATCATCTGGATATAAGGATATTCCCCCTATGCCATCTGCTTGGAATGGGTCTTCTCCATTATCCAGCCCGACATCAGCCACATCTCTACAAGAACTGATTTCTCCTTCTTCTAACATCTGGGCTTCCCCTGATCGTGTTAACAAAGAACGGGTTGTTGATGCATTGTCAGGCAATCGGGTCCCATATGACAGAAAACACACCCCTGGCCGACGCCCTTACTCTCCAGCATTTGAGGATGATGCTATTATCAAAGCTATGCCAAAGCCAGAAAACCTCCTACCTCCTAGCAGCTTTATCAAAAAGCCACCCGTCAACGCTATTCGCCTTGAAGACCTTGAAAAGGAGTTCTCCCATAACACTCCACCAAGAGCCCAAGTAGATCCTAGGATAGCAACACCCTCTTCAGGCAGAATCAGACCGCCACCTGGAATACCACACCCATTAATGACACCCCAGGGCTACATGCAAGGTTCGACGTCACCCAACATTATGCAGCGCACTCCACAGGGACAAGGCATGGTTAGGGGGCAGCCACACCCAATGATGACACCTCAGAGGCCACCATCACCTAACATGATGCGTCACACCCCTCAGGGGCCTGTCATGCAGCAGCATCGACCCTATCCAATGCCCCCTCAGATGTTCCAAGGCCGGCAGATGGCAGGCAAGCACCCCCTTCCCAGTATGGGCAGCCCAATACAGGGCTTTATGCGCACCCCTCCACCGCAGTTCCAGAGGCCGCCTGTTCCCATGATGCACTCTGATCCAGCGCACTTGATGCACCATGGTAACATGATGAACTACCAGATGAACCAGCGACACCGCTACTCAACACCTCAGCCACACCCCAATCAATACAGGAACTTCCCAAACAACCGCAACCAGTACGACCGAAACTTCCAAGACAGGCGTGGCCATTACCTTGATGACAATCGTCACGTCCACCAACAGACGGACTTAGAGAAGAAGATCCATGAGATACTGACATGTGATGAGCATATGGCAGCGCATGATCCATATGCTGGGTTAATGACCAGGCGAGAGAAAGAGTGGATCATCAAAATACAGTTGTTGCAGCTAACAAGTAGCATGCCAGATCTGGATGACTTTTATTTCCAGACTTACATCAGACGCAAGCAGGCCAAAGAGAGGGCTAAACAGGGTGAGATGCGAGATGGTGAAAACACAACACAGATGGCTCTACCGCAGTTTCAAAGAGAAGAGAGGAACTATAAGCCATTGGATTTCCAAGGAACTCTTGGAAAGGTCTCTGCTTCATCTGTATCTCATCCAAGACAGATGGTTGCTATCGACCACATCAGCAAGGCTTCAGAACAGGATAAGCAGTCCAGCTCATCAACAAAAGACATCAAACGTCGACGTCAGATATTATCAGCCATTGAGAAGGCTTATGAGTACCTACTCCAACTGGATGATCTAGAACGGAAGATAACACACGTCCATCCAGAAGAAAGGAATTCTCTACTGGAGGCGCAACAGTCCACTGGTCTGAAGCTTTTCAACCTGCTAAAGCTCAACATTCGCTCAGAGTCTATAGGGGGAAAATGCGATGAGGAGTACTTTGTGCAGTTGATGTCAGTGAGGAAAGGCAAGGTGCTACTAAGTCGTGTGCTACCAGCCTTGAAGCAGCCCCAAGCGGAGGCAGTTCTGCTGGCATTAACACGGAATGTCATTTCTGTTATTAAGAAAGATAGCCAAGATGAGGTTTTACCGCTGTTAATCACTCCTGTGTCACGTGTCGTGGACCAAGGATCATCAGCAGTACTGTACGAGTCTCTCCGGCACATGGTCTATGCAGACGACACCTCAGCACTTCACACCATTCTACCTAATCAATTCGGCGCTAGTCTATTAAACTCTCTTCTGAAGTCGTGCTCTTCACTCTCAAGTTCAATGGACGAAAGCATGGGTGACTTCCATCAGTTATGGGAAAAGTTAGTAAGTGATGTTGTCAAGGAGTTCCACAGTGTTCCTGTCACTCTGCTTGCCAAGAATGTGCTAGCAATTACTCCCTTTGTGGGAACGCTGTGTGAATGTACGAGTCCCGATGTTTCGACAAGCTTACAGGAACACTATAGGAATGCTATTCTAACTAAAGAAGAATCAAAGAAGTAA

Transcript

rna-XM_032378887.2

CGTGACCATTACCTGCGCGCCTGCGCTACACATTTCCTTCCACCATGACAAGATGGCGGGCGAATCTTTTTTTGGATTCAACACGCAAATGCCATCTTTCGAAGACGAGGAATTAGAAAAACTTGACCCCACTTTGAAGAACTTGGATGATGACTATGATTTGCTTAACGAAGATACTTTTGGCTCCGGAGCACTAGAGGATGACTGGGAGATTGCGCACAAGAAGCTTGCAGGTATTGACCTTGACAAAGCAACAAATCAATCCTTAGTCAGCAAGAACGAGCACTGTCGTCAGAAAGTGGGCGTGactgaagatgatgatgatgatgaggctAACTTGGAACaggaagagGAGATTCTCGAGCAGACCCTGGCTAAGTTGgttgatgaggatgatgatacCCCTAAGCCATACACATCATCTGGATATAAGGATATTCCCCCTATGCCATCTGCTTGGAATGGGTCTTCTCCATTATCCAGCCCGACATCAGCCACATCTCTACAAGAACTGATTTCTCCTTCTTCTAACATCTGGGCTTCCCCTGATCGTGTTAACAAAGAACGGGTTGTTGATGCATTGTCAGGCAATCGGGTCCCATATGACAGAAAACACACCCCTGGCCGACGCCCTTACTCTCCAGCATTTGAGGATGATGCTATTATCAAAGCTATGCCAAAGCCAGAAAACCTCCTACCTCCTAGCAGCTTTATCAAAAAGCCACCCGTCAACGCTATTCGCCTTGAAGACCTTGAAAAGGAGTTCTCCCATAACACTCCACCAAGAGCCCAAGTAGATCCTAGGATAGCAACACCCTCTTCAGGCAGAATCAGACCGCCACCTGGAATACCACACCCATTAATGACACCCCAGGGCTACATGCAAGGTTCGACGTCACCCAACATTATGCAGCGCACTCCACAGGGACAAGGCATGGTTAGGGGGCAGCCACACCCAATGATGACACCTCAGAGGCCACCATCACCTAACATGATGCGTCACACCCCTCAGGGGCCTGTCATGCAGCAGCATCGACCCTATCCAATGCCCCCTCAGATGTTCCAAGGCCGGCAGATGGCAGGCAAGCACCCCCTTCCCAGTATGGGCAGCCCAATACAGGGCTTTATGCGCACCCCTCCACCGCAGTTCCAGAGGCCGCCTGTTCCCATGATGCACTCTGATCCAGCGCACTTGATGCACCATGGTAACATGATGAACTACCAGATGAACCAGCGACACCGCTACTCAACACCTCAGCCACACCCCAATCAATACAGGAACTTCCCAAACAACCGCAACCAGTACGACCGAAACTTCCAAGACAGGCGTGGCCATTACCTTGATGACAATCGTCACGTCCACCAACAGACGGACTTAGAGAAGAAGATCCATGAGATACTGACATGTGATGAGCATATGGCAGCGCATGATCCATATGCTGGGTTAATGACCAGGCGAGAGAAAGAGTGGATCATCAAAATACAGTTGTTGCAGCTAACAAGTAGCATGCCAGATCTGGATGACTTTTATTTCCAGACTTACATCAGACGCAAGCAGGCCAAAGAGAGGGCTAAACAGGGTGAGATGCGAGATGGTGAAAACACAACACAGATGGCTCTACCGCAGTTTCAAAGAGAAGAGAGGAACTATAAGCCATTGGATTTCCAAGGAACTCTTGGAAAGGTCTCTGCTTCATCTGTATCTCATCCAAGACAGATGGTTGCTATCGACCACATCAGCAAGGCTTCAGAACAGGATAAGCAGTCCAGCTCATCAACAAAAGACATCAAACGTCGACGTCAGATATTATCAGCCATTGAGAAGgcTTATGAGTACCTACTCCAACTGGATGATCTAGAACGGAAGATAACACACGTCCATCCAGAAGAAAGGAATTCTCTACTGGAGGCGCAACAGTCCACTGGTCTGAAGCTTTTCAACCTGCTAAAGCTCAACATTCGCTCAGAGTCTATAGGGGGAAAATGCGATGAGGAGTACTTTGTGCAGTTGATGTCAGTGAGGAAAGGCAAGGTGCTACTAAGTCGTGTGCTACCAGCCTTGAAGCAGcCCCAAGCGGAGGCAGTTCTGCTGGCATTAACACGGAATGTCATTTCTGTTATTAAGAAAGATAGCCAAGATGAGGTTTTACCGCTGTTAATCACTCCTGTGTCACGTGTCGTGGACCAAGGATCATCAGCAGTACTGTACGAGTCTCTCCGGCACATGGTCTATGCAGACGACACCTCAGCACTTCACACCATTCTACCTAATCAATTCGGCGCTAGTCTATTAAACTCTCTTCTGAAGTCGTGCTCTTCACTCTCAAGTTCAATGGACGAAAGCATGGGTGACTTCCATCAGTTATGGGAAAAGTTAGTAAGTGATGTTGTCAAGGAGTTCCACAGTGTTCCTGTCACTCTGCTTGCCAAGAATGTGCTAGCAATTACTCCCTTTGTGGGAACGCTGTGTGAATGTACGAGTCCCGATGTTTCGACAAGCTTACAGGAACACTATAGGAATGCTATTCTAACTAAAGAAGAATCAAAGAAGTAAAGGCGCACAAGTAGATATCGGAATGTCAAGATAGGTCAACAGATTTGTAGTAATGTAACATTGTGATGTCAGCGTGACGGAAGGTAAGGAACCTCGCAGACGTCAATCGCATAGCAAGTTCATGAGATGTTTAGATAAAGATATAGACCGTTATGGAGCCAAATTTAAAATTCAACCTTCATGTATAGCGGGCTTTCATCCAGCTGCGATCTTCGATAGAAAGGGTACTTTTCAAAGTCGCGGTTTCAATAGTTTGCCTCAGTCAAAATCTAAATGTGGTCCTCTTGGCGTCAACCTCTATTAATATATACAGCTGATTCCCTTTAACTTGGGCCTTCATGATGAGTCAAATTGTTTGGAAAAATGGAGCTCGAGCTATCAAGGGTCTAGAAAATCAGTATTCACTTCGATAAAGAAAGATGCTTTATTTCTGTACAATTCGAGTGATCGTAATTCATCTGTATTTAGAAATACCAATGGTACGAATCTTTATAATCGTTTCGTATGTATCTTTATGTGGTCGCAACGATGCAAGTATATTTCAAACATGCCTAAGGTATCATGGCCAATGAATTTCTTGCATGGTTTcgcccccccaaaaaaaaacatttaactgCACAAAGCAAGACATTGATTGGCCAGGGGTTGTTTTTAGTGACAACCTAGATCATAGACGCATTATACCCCGCAGCTCTAGATTATGAAGTATTGTCACTTCTTCcttttgcttttataaaaTGTCTCTTTTGTTCAAGGTGATAACATTTTGAAATACCATAAGTTTTAACAGAACTTAGAAATGATTATCTGTTATTAAATTCTCTGTACCAATACGTTTGGAAAGGAATAATAAGGTTAAGAGGTTGTAATATGAACAAGTTAGTCTATCCGAAATTTATAGGAACAATAAATGCACAAAAATGAATGTTTTCGATTTTCAGGAGAATCTTATATTTATTTACCTTTCGAATTTCATAAAAATAGCACAGGAAAAATGAGTGACATCTAAGTAGCATATTTGTGCGGGTCTAAAATATAcagtaacatgtacagcatAAAGCTCGAGCTAAGTAGATATCAAACGTTGCTTACTGAAATAACACTTCTAACAGTGTTTGTAAAAATGCCTACCCAGAACGGCGTAAATCCCCCCTGTGTTTAATGTTACATTGACTTTGGAGAGAATGAACGAATGTAATACGAACTATAactgaattttgaaaataaattcGACTTTTCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RRV3	Protein PAT1 homolog 1 OS=Danio rerio OX=7955 GN=patl1 PE=1 SV=1
Q5R8Q4	Protein PAT1 homolog 1 OS=Pongo abelii OX=9601 GN=PATL1 PE=2 SV=1
Q86TB9	Protein PAT1 homolog 1 OS=Homo sapiens OX=9606 GN=PATL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09770 all species →	PAT1	Topoisomerase II-associated protein PAT1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019167 all species →	Domain	mRNA decay factor PAT1 domain	Interproscan
IPR039900 all species →	Family	Pat1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551 all species →	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12617	PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234778.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

44.3Max TPM

25.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	27.43	30.38
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	21.84	29.49
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	21.96	23.76
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	21.32	25.36
whole 6 week old aboral regenerate · regenerate uncut	3	3	21.71	21.95
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	19.12	34.29
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	26.41	30.78
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	32.30	34.87
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	28.88	32.71
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	31.06	36.82
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	30.04	32.44
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	34.44	44.29
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	25.86	27.50
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	20.42	32.67
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	27.22	30.73
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	10.46	31.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	30.38
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	28.56
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	23.34
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	29.49
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	18.96
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	17.06
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	23.76
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	21.48
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	20.62
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	25.36
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.16
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.44
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	21.95
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	21.89
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	21.28
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	34.29
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	23.08
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	30.78
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	25.25
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	23.21
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	34.87
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	34.31
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	27.71
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	32.71
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	27.88
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	26.06
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	36.82
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	28.70
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	27.67
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	32.44
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	31.39
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	26.28
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	44.29
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	32.13
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	26.89
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	27.50
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	26.74
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	23.35
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	32.67
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	28.59
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	30.73
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	28.47
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	22.47
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	31.38
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.