Gene detail

Detailed information of XP_032234827.2 in Nematostella vectensis

Genomic Location: NC_064047.1:9434375...9442987
NR annotation: XP_032234827.2, uncharacterized protein LOC116616841 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032378936.2

ACCACAATCTACGTCCGTGGGAAATTGCTTCCCGTTCCAACATGGCGGACATTTTCATCGGTAACCAAGCGGGAGTGTTTATAATTTTCTCTAGAAGATAAGAAAAATGCTAAGATACGATACAAGCTTTTCGTGTTGAAAACAGATTCCTTTATTTTGCTTTGATGGGAAACGGGGCGAGTGGGAATTCACAGACCCTTGATCGATCATCAAATCTAAAGGTCCGCAATACCAATTTGCATCCCTCAATAAGGAAACGTCTTCAAAATTGGCTTGACAACGCCCCATTCACACTAGATGAAACCCAAACTCAAGCTATCTATAAAGCTGCAACGTTTGTTGAAATAAACACACCACAATTGTTAATCACAAAAGGCTCTGACCCAGTTGGAGTATACATCATAACATGTGGTGAGGCAGAAGTTGTAAGTTTGGATCCTAGCAGTTATCACCATAGCAACCAGGGCCCTAGCAACCAGGGCCCTAGCAACCAAAACAGCAATCCTGAATTGAATCAGGTTCAATCAAAAGAGTATGTCATACGAGTGTTTACAGAAGGGGAGTGTTTTGGTGAGGTATCAGTTCTGTATGATATCCCTTGCATTGCAAATGTGAGGGTTCCCTCGCAAGCCTCGCTCATACTGCTGAGGGCTGCCGATGTGCAGGGGATCCTGACTCCTCCCCTGGAGGTGCCAATGCTAAGATTGTGCTCCATCAGGAGGTATCTGGACACTGCCCATCTGTTTGAGGATCAGGCATTGAGTAAGATGGTCGCACTGGATGTGCTTAGGGAAGTACCGGTGCTTCATGGTTGGGAAGAGGCCGCCATCAAGGACCTTATTAAAGCAATGAAGCAAGAAATCATAGTGCTGTACCCTTGTGGGAGTGCTGTTTACCGAGAGGGTGACCCAGGCCATGAGATGTATGTCCTGGTCCATGGGCGGGTGGGGCTCTTTGCAGAAGGGCACCAGCTGGCAGTGTTTGATAGCGGTGACAAGAGAGGGTTCACTTTCGGCGAGGAGGGATTCTTTACCGACAAGGAGAAAAGGTGTACTATCAAGGCCCTTACTCCATGCCAGATCATCACCCTCAAGAAGCACCACTTCTACTACATTCTCAACCAGTATCCCAACGAAAAGGTCATACTTCAGGTCTATAATGAAAAGTGGAAAGAAAACCTGAGCAAGAGAGACCAAGAGTTGTATGAAAAGTATGGCGGAGCACTAGACCTTGAGATGCTCAGGATGACCTTAAGGCAGAGTGCATTCTTCAAGGACTGCCCTCCAGGGTTCATCTATATCATCGCACTATCTATGCTTGTAAGGGAAATCCAAGAGGAGCAGGCTGTGTTGTCGCATGCGCAGTACAAAAAAGGAGACACATTGTTTCTGTTGCTCCAAGGGGAGGCTATAGTTACTGAAGATCACGATGATCTTTTCCTCACCGTAGATGTGAAACAGGTGTTCCACAAGGCTTCATCTTTGCCCGAGAAGGCCTGGGTCAAAGCAACAGAACTAAGTATTGTTGCATACTTTAATACTGCTGTAATAAGCGAAGCAAAAATGGCTTAGCCTGATACTGTGATGCCAGAAATATTATAATACACTATTATAGTATTCATTATACAGTATACAACTATTTCATAAagcgttgtcagtgcaaatggcagaTGGCCATTGataaatggcagttctacgaccgagaGGACCCGTAGATCCCAAAATATTTGggaaaaatatcaataaatttagaaaaatatcaataaaacaTGCGGCTATCCATTTAATGGTTCTGTTCCACTTaagttatttttacaaattattGCTATCCATAAACACCTtccggtcgtagaactgccatttggcatTGCCTTTCACCGTTTGtgctgacaacctttattgaagtAGGTGTATTCACCACGTGATAACGGACGGACCtttagaaaagtgaaggggggggggggggagggctagTTTCAGtcgtgcattttttttttgtctccaAGACGTGCATGAAGCTATaattctttttgtttcttatcccccccccccccttcgctTTTCGAATGGTCTGTCCCTAAAGAAAATCATCCATTGTTGTACCAgttatagcctgcgtagcctTCCCTTGAGCCGCTGCCCAGGCTACATCAGTTAAATTAATACATCAGTTGAATTACACACTAAAAAAGTGGGTCTGACTCTTTCAAACTCTAGAATAGGGTTCAAGATCACCTTTCAGTTAGATTATAGTGTACATAAAAATCTCTCTCTGTGAACTCGGAACTTTTGAAAGTGTCTGTTATACAGAGTTAAATTGAGGTTCGTTTTATGGAGGTTCCATTgtatgtgttgtgtgacaatAATAACAGACGATATTGACgtatttttattaatgttGCAAAGCTTTTGACAATAAAGACCACGGCAAGACAACAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003283 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16431 all species →	NEUROGENIC PROTEIN MASTERMIND	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000775 all species →	Cellular Component	chromosome, centromeric region	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0034080 all species →	Biological Process	CENP-A containing chromatin assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032234827.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234827.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

14.6Max TPM

8.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.98	10.82
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.77	10.75
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	8.25	8.44
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	9.43	10.53
whole 6 week old aboral regenerate · regenerate uncut	3	3	10.14	11.79
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	6.18	9.78
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.80	11.10
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	10.33	11.17
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	10.86	12.49
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	5.51	8.51
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	8.91	9.50
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	6.93	11.81
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	11.73	14.57
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	7.04	10.61
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	11.98	13.48
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.23	9.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.82
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.45
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.68
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.75
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.81
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.76
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.44
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.38
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.93
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.53
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.79
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.98
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.79
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.10
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.54
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.78
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.77
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.10
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.30
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.17
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.79
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.01
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.49
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.87
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.22
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.51
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.02
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.50
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.15
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.08
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.81
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.99
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.57
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.45
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.16
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.61
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.50
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.48
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.10
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.37
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.69
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.