Gene detail

Detailed information of XP_032234889.2 in Nematostella vectensis

Genomic Location: NC_064042.1:2240120...2259044
NR annotation: XP_032234889.2, structural maintenance of chromosomes protein 6 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509932

ATGGTGAATCGAAGGAAGCGAAACCGTACCATTCAAGAAGAAAGCGATTCAGATGCGAGCGGAGATGAAGGTGCGAGTTCTGAACCCAGCACAAGCCACGCGCAGAGCAGCAAGCGAAGCAAACCAGATACCGATGATGCTAATGATACGGACCTACAGGACTCAGATGACTTGGACTGCACACAGCCTGAACTTGCGACCAATAAGGATGAGGCGGAAGTCGGGATCATTGAGAAAGTCACCCTGGTCAACTTCATGTGTCACACCATGCTAGAGGTTCCACTGGGTCCAAATGTTAACTTCATCATTGGCCGTAATGGAAGTGGAAAAAGTGCCATCATGACAGCCTTAGTGGTAGGCCTAGGGGGCAAAGCTACAGTCACAAGCCGAGGAAGCTCACTGAAGGGGTTCATCAAAGAACATTGCCATTATGCACTTATTTCTATCAAGCTTAGAAATCGTGGCTTAGATGCTTATTGTAAGGACAAATATGGCCCTTCGATAACAGTGGAGCGACGCATTAATAGTGATGGAAGTGGTTCTTACAAGCTGAAATCTCACTCTGGCAAAACAGTTTCCACTAAGAAAGAAGAGCTGAATCACATCTTGGATCAATTCAACATTCAGGTGGATAACCCTATTTCTGTCTTGAACCAAGACACCAGTAGGAACTTCCTTAACTCTTCTGACCCCAAAGACAAATACAAGTTCTTCTTGAAGGCGACTCAACTTGAGCAGATCAGTGACGATTACCAGATGGTACTCACACATCAAGAGGTTATCAATGACATGTTGGAGAAAAAGGCAAAGATGATCCCGATAACTGAGAAGGAAGTGAAGATCCTTGAGAACAAGTACAACGACCTGAAGCAGCTGAGAACAATGAAGGACCAGGTGGAAGAGTTGAAGAAGGAGAGGGCATGGGCAGAGGTCATTGAATATGAGAAAAGACTTGGTCCCTTAGAACGAGAAGTGAAATCCAAGCAAGACAAACTGCCAAGGTATGAGGCAAAGGTTGAAGAATGCAATGCAGAAGTCCTTAGACTGGAATCCGAATCGCAGGCCATTGAAGCTGAGATTGAAACTGTCCTTAAAGAGGCAAGGGAGGCGCAACCAGAACAGACAGAGATTGAGGCAGAGCTCAAGGATATTAAGATTGCCCTCCGAAAGAAAGAGTCTGAAGTTCGTAAAGCCAGACAAAGCCTCAGATCTGCTGAACAGGACATGAGTGACCTCACAGAAAGGATCAGTGAGATCAAGCAATCTGCACTCCATGACCGAGAAGCTGAGAGACGGCAAAGAGAGGAAACTTTGGCAAAGAAGAGAGAGGATCATCAAGCTGGTCAGAACCAGCTCAATATCACCAGTCACCACAAGGATCAGCTAAACCAGGCATTGAGTCGGGCAAAAGAAAACAGCTACTCTCTCAAAACGGATGTGAATGATGCCAAACGTGCTGTTGATGCCACCCAGAGGAACTTGACAAACCTTCAGAGCAGCACCAGGGATAAGTTGAGACTGTTTGGTCCATGGATGCCAGACCTTGTCAATCACATTCAGCAAGCTGCAAGGAGAACTCGCTTTCACAGATTGCCTGTGGGGCCGATAGGTGCTCATCTCAAATTGAAGAATCAGAAATGGGCGTTGGCTGTGGAGAGCTGCATTAAGGGTTTGGCAATAGCGTTCTGTTGTACTGATAGTCACGATGAGCAGATCCTGCGACAGATTATGAAGCAGGTGTGCCCACCAAACAGTATCCCACAGATCATCATCAGCAGGTTCCAGGACAGAGTTCATGACGTCTCAAGAAACAAGCCTCGCTGTAAGTACACTACAGTATTGGATGAGCTGGTAGTTGATGACCCTGTAGCGACAAACTGCTTGATTGATCAGCTCAGTGTGGAGTCTGTTCTTCTGGTTGAAGACCCCAAGGAAGCACGTGACGTCATGTTCTTTCATACTCCCCAAGGGGCAGGCATGGCTTATGCTATCAATGGTGACCAAGTGATAGGGGGACGATCAGCCAAGTACTACTCTGCAACAAGTTCTAGTGCACATTTCTTGCAACAGGACATTGAACAGGAAATCAGACGTCTTGAGAGAGATCTGAATAACAAAAGGCAGCAGCATCAGCAGTTACAAGACGAACTACGTCAGCAAGAGGCCAACATTGCTGAAAACAAGAGAGAGCTTGTCAGAACTACCAACAAAGCTATGCGAGAGCAGGAGGTTGTCAATCGGCTATTGGAGGAAATCAAAGAGCTTGAAAATTTTGAAGAAGAAGAGCTTCCAGATGTAACAACTCTGGAAGAGGAGGTTGTGAATATCACTCAACAGATTGCAGAGCTGAAAGAACAGAAAACGAAACTAGAAGAGGAGTTTGAAGCCATCAAAGAGAAGCACCAGAAGCAGGAGCTAAAGAAGCAGAGATTCAAGGAGAAGATGGAGGTGCTCCTGAGGAAGCATGAGCCACTCACGAAAAAGCAAGAAGAGACAATGGTGGAGATCCTGACAGCAAAGAATAACAGAAAGCACTACTCAGATAAGGTGCAGGAAAACAAGGACGCGATCAGCAAAGCTGAGAAAGCGGTGGTGGAAATGACGCGGAAAATAGAGAGCACTTCTGCAATGGCCGCTCAGTATTGCGGCAGTCCCGATAAGATAGAGACAAAGAAAACCGTAAAATCCTTGGAGTCCGAGATTCTGCAGAAAGAAAAGTGTATCAGGACAGAGGAACAGAAGAAAAACCACGGCACGCACGATCAGATAACAAAACAATACTTCGACGCTTTGAAAGAGCTGGAACACATCAAAGATTCTTTGAAGAACCTCAGACGCTTCAACAAGCGTTTAACAAACATGATGAAGAAAAGAACACAAGCATATCAAGATTACCGGGGTTTCATCGCCATCCGTGCTGCCTTCTTCTTTTCGATGATGCTCTCGCAGCGTGGTTACCAGGGCAAGATGAAGTTTGACCACAAGAACGAGGCCTTATACCTTCAGGTGAATGTAGAGCAGGGCAAAGGGCGTAATGCCAAAGACACTCGTTCGTTATCTGGTGGCGAGAGATCCTTCTCTACTGTATCGTTCATCATGGCTTTGTGGGAAGCCATGGAGTCGCCGTTTAGATGTCTCGATGAATTTGACGTATTCATGGACATGGTGAACCGCCGCATTAGCATGCAGATGATGCTGAAGGTAGCGAAAGAACAGCTACAGCGACAGTTCATTCTTCTCACACCACAAGACATGAGTGCCATCGGTGGCGGGCCAACTGTAAAGATCTTCAAGCTAAGGGACCCTGAGCGCGGCCAGACCATTTTACCCTTCCAACCTGTGGGACAGATTAACGACGACGAGGACCGATAG

Transcript

rna-XM_032378998.2

GCATTTAGCGCCATTTTCTGAAATCTGAGCCACGCAAAACAACAGACGAGCGTTTGTGGACTCATACAAACCTTTTTCTCCATCTTCCTACCCTTTCTCAGCTGTGGGCGTTCTAAAAAACCTAGTGCTGCTGGTTTAATCTGTATTATTTCCATTGGACATGGTGAATCGAAGGAAGCGAAACCGTACCATTCAAGAAGAAAGCGATTCAGATGCGAGCGGAGATGAAGGTGCGAGTTCTGAACCCAGCACAAGCCACGCGCAGAGCAGCAAGCGAAGCAAACCAGATACCGATGATGCTAATGATACGGACCTACAGGACTCAGATGACTTGGACTGCACACAGCCTGAACTTGCGACCAATAAGGATGAGGCGGAAGTCGGGATCATTGAGAAAGTCACCCTGGTCAACTTCATGTGTCACACCATGCTAGAGGTTCCACTGGGTCCAAATGTTAACTTCATCATTGGCCGTAATGGAAGTGGAAAAAGTGCCATCATGACAGCCTTAGTGGTAGGCCTAGGGGGCAAAGCTACAGTCACAAGCCGAGGAAGCTCACTGAAGGGGTTCATCAAAGAACATTGCCATTATGCACTTATTTCTATCAAGCTTAGAAATCGTGGCTTAGATGCTTATTGTAAGGACAAATATGGCCCTTCGATAACAGTGGAGCGACGCATTAATAGTGATGGAAGTGGTTCTTACAAGCTGAAATCTCACTCTGgcaAAACAGTTTCCACTAAGAAAGAAGAGCTGAATCACATCTTGGATCAATTCAACATTCAGGTGGATAACCCTATTTCTGTCTTGAACCAAGACACCAGTAGGAACTTCCTTAACTCTTCTGACCCCAAAGACAAATACAAGTTCTTCTTGAAGGCGACTCAACTTGAGCAGATCAGTGACGATTACCAGATGGTACTCACACATCAAGAGGTTATCAATGACATGTTGGAGAAAAAGGCAAAGATGATCCCGATAACTGAGAAGGAAGTGAAGATCCTTGAGAACAAGTACAACGACCTGAAGCAGCTGAGAACAATGAAGGACCAGGTGGAAGAGTTGAAGAAGGAGAGGGCATGGGCAGAGGTCATTGAATATGAGAAAAGACTTGGTCCCTTAGAACGAGAAGTGAAATCCAAGCAAGACAAACTGCCAAGGTATGAGGCAAAGGTTGAAGAATGCAATGCAGAAGTCCTTAGACTGGAATCCGAATCGCAGGCCATTGAAGCTGAGATTGAAACTGTCCTTAAAGAGGCAAGGGAGGCGCAACCAGAACAGACAGAGATTGAGGCAGAGCTCAAGGATATTAAGATTGCCCTCCGAAAGAAAGAGTCTGAAGTTCGTAAAGCCAGACAAAGCCTCAGATCTGCTGAACAGGACATGAGTGACCTCACAGAAAGGATCAGTGAGATCAAGCAATCTGCACTCCATGACCGAGAAGCTGAGAGACGGCAAAGAGAGGAAACTTTGGCAAAGAAGAGAGAGGATCATCAAGCTGGTCAGAACCAGCTCAATATCACCAGTCACCACAAGGATCAGCTAAACCAGGCATTGAGTCGGGCAAAAGAAAACAGCTACTCTCTCAAAACGGATGTGAATGATGCCAAACGTGCTGTTGATGCCACCCAGAGGAACTTGACAAACCTTCAGAGCAGCACCAGGGATAAGTTGAGACTGTTTGGTCCATGGATGCCAGACCTTGTCAATCACATTCAGCAAGCTGCAAGGAGAACTCGCTTTCACAGATTGCCTGTGGGGCCGATAGGTGCTCATCTCAAATTGAAGAATCAGAAATGGGCGTTGGCTGTGGAGAGCTGCATTAAGGGTTTGGCAATAGCGTTCTGTTGTACTGATAGTCACGATGAGCAGATCCTGCGACAGATTATGAAGCAGGTGTGCCCACCAAACAGTATCCCACAGATCATCATCAGCAGGTTCCAGGACAGAGTTCATGACGTCTCAAGAAACaagCCTCGCTGTAAGTACACTACAGTATTGGATGAGCTGGTAGTTGATGACCCTGTAGCGACAAACTGCTTGATTGATCAGCTCAGTGTGGAGTCTGTTCTTCTGGTTGAAGACCCCAAGGAAGCACGTGACGTCATGTTCTTTCATACTCCCCAAGGGGCAGGCATGGCTTATGCTATCAATGGTGACCAAGTGATAGGGGGACGATCAGCCAAGTACTACTCTGCAACAAGTTCTAGTGCACATTTCTTGCAACAGGACATTGAACAGGAAATCAGACGTCTTGAGAGAGATCTGAATAACAAAAGGCAGCAGCATCAGCAGTTACAAGACGAACTACGTCAGCAAGAGGCCAACATTGCTGAAAACAAGAGAGAGCTTGTCAGAACTACCAACAAAGCTATGCGAGAGCAGGAGGTTGTCAATCGGCTATTGGAGGAAATCAAAGAGCTTGAAAATTTTGAAGAAGAAGAGCTTCCAGATGTAACAACTCTGGAAGAGGAGGTTGTGAATATCACTCAACAGATTGCAGAGCTGAAAGAACAGAAAACGAAACTAGAAGAGGAGTTTGAAGCCATCAAAGAGAAGCACCAGAAGCAGGAGCTAAAGAAGCAGAGATTCAAGGAGAAGATGGAGGTGCTCCTGAGGAAGCATGAGCCACTCACGAAAAAGCAAGAAGAGACAATGGTGGAGATCCTGACAGCAAAGAATAACAGAAAGCACTACTCAGATAAGGTGCAGGAAAACAAGGACGCGATCAGCAAAGCTGAGAAAGCGGTGGTGGAAATGACGCGGAAAATAGAGAGCACTTCTGCAATGGCCGCTCAGTATTGCGGCAGTCCCGATAAGATAGAGACAAAGAAAACCGTAAAATCCTTGGAGTCCGAGATTCTGCAGAAAGAAAAGTGTATCAGGACAGAGGAACAGAAGAAAAACCACGGCACGCACGATCAGATAACAAAACAATACTTCGACGCTTTGAAAGAGCTGgaacacatcaaagattctttGAAGAACCTCAGACGCTTCAACAAGCGTTTAACAAACATGATGAAGAAAAGAACACAAGCATATCAAGATTACCGGGGTTTCATCGCCATCCGTGCTGCCTTCTTCTTTTCGATGATGCTCTCGCAGCGTGGTTACCAGGGCAAGATGAAGTTTGACCACAAGAACGAGGCCTTATACCTTCAGGTGAATGTAGAGCAGGGCAAAGGGCGTAATGCCAAAGACACTCGTTCGTTATCTGGTGGCGAGAGATCCTTCTCTACTGTATCGTTCATCATGGCTTTGTGGGAAGCCATGGAGTCGCCGTTTAGATGTCTCGATGAATTTGACGTATTCATGGACATGGTGAACCGCCGCATTAGCATGCAGATGATGCTGAAGGTAGCGAAAGAACAGCTACAGCGACAGTTCATTCTTCTCACACCACAAGACATGAGTGCCATCGGTGGCGGGCCAACTGTAAAGATCTTCAAGCTAAGGGACCCTGAGCGCGGCCAGACCATTTTACCCTTCCAACCTGTGGGACAGATTAACGACGACGAGGACCGATAGAAATACGTTAAAAAGGATAACAAATGCGTTGATAACCACCAGCATCAACAAAACCATCACCTCATCTCTGAACACTAATTATCATTAACATTATCATTACATTTAATCGTCATCACAATCATATCCACATTGCTGTTAATTCCGGCACGTTCATCGCCATTCTCATCGCGgattccgccattttgaaatgttGTTAATTCCAAGAAGACTTCCAAGTAGTGAAAGGACATGTATTGGATCAAGGGCGAGAGCCCGGAATTTGATAAACAACGCTGATCACTTTGGAAGAATTAAAGTACGGTGACTCTTTGGGGAGGTGACTCTTTGGGGAGTCACCCGACGCTTATCATCAGCGATATCAATTCACTGATCAAAAATACCCTTGACAGCTTGGCACAGTTAAGCCGCATGCGTTCGTTTTCAAGACAATGAATGCATCTCAGATTATTTGTTACTGTTGAAAATGATTTTAATCCAGATGATCTCTGTCAAGAGGAACAATTTCCGGAAACATATTGTCTCCTCATCTATCGCGGAAAACTCGACTTATTGTGGACAACGATTAATGTTGGCCAGGAGTGATTGTATTGCCTCCAGGTGGGAGAGGAGACGGCTGCAAACGGGAACACGCTCTCGCAAGATGGACGACGGCTATAGGAGTTTTCCTATCGATCGTTTTGAACTATTCGTTTTGAAATAGAAACTTAattttgaaaatcaaatttataAAATGTGAAATCAGTTGTGTGGCAAATTCTATCGTCTCTAAATCCACTATAATGAAGAGGCAGCTATAGTACTCTCCCCTAACATTTACCGCCCCTCCGTAATAAGTCTGAtacccgccattttgtcatcctagcaaaataccaagtgtgaaaaagcatacatttccatcggcttatttgAGAAAGTTAAAGTTGCTGTGATATGTTCTATTGAGCTTGGTTAAACGAAGCATAAAATTTTGTTCTTAGatggtaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P9I7	Structural maintenance of chromosomes protein 6 OS=Xenopus laevis OX=8355 GN=smc6 PE=2 SV=1
Q924W5	Structural maintenance of chromosomes protein 6 OS=Mus musculus OX=10090 GN=Smc6 PE=1 SV=1
Q96SB8	Structural maintenance of chromosomes protein 6 OS=Homo sapiens OX=9606 GN=SMC6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001808 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19306 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22804	SMC6; structural maintenance of chromosomes protein 6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032234889.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

27.0Max TPM

11.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	17.67	18.27
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	12.40	17.97
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	11.31	11.92
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	10.78	11.90
whole 6 week old aboral regenerate · regenerate uncut	3	3	10.65	12.25
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	6.84	11.65
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	16.54	18.55
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	15.96	18.26
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.24	12.25
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	10.64	10.96
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	10.91	11.77
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	15.03	19.40
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	20.41	27.01
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	11.37	19.89
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	9.26	13.90
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.78	11.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.27
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.42
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.32
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	17.97
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.90
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.32
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.92
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.35
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.66
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.90
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.34
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.09
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.25
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.93
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.77
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	11.65
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.88
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	18.55
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.82
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.25
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	18.26
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.63
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.98
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.25
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.47
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.96
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.86
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.09
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.77
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.24
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.72
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	19.40
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.44
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.27
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	27.01
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.43
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.80
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	19.89
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.21
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.90
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.87
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	11.35
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.