Gene detail

Detailed information of XP_032234996.1 in Nematostella vectensis

Genomic Location: NC_064044.1:3346466...3365446
NR annotation: XP_032234996.1, heterogeneous nuclear ribonucleoprotein A/B isoform X3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032379105.2

CGGAATGTTGAGTATTTGGCGCTGCTTTCAGTTTGTGTCTGATTCTCGGCGCATGGTGACCGTGTCTTCGCGGGTTTGCGGCTTTTTGGGATGATTTCCAGCTAAATTGAAACCCATAGAGTTGTGAAATACAAGATTATGAGTGCCGAAGAGGCAGTTAACGGATATATCGGTACCTCGCTCgattcaaacaaaacaagaatgACGAAAGACGACGATATAGGGAAGTTATTTGTGGGAGGTTTGAGCTACGAAACTACGAAAGAATCTTTAAAGGAATACTTCAGCAAATATGGAGAACTTGTCGGAGTTGATATTAAAATGGACGCATTGACCGGCAGACCAAGGGGTTTTGCCTTTGTTCAATTCAAGCATCAATCGGAGGCAGATGCGGTACTAAACCAAGTGGATCCACATGTGCTAGATGGAAGAACGattGACCCAAAGCCTGCTGCACCTATTGGAAAGCCGCCCCACTTACGTGTCAAGAAAATTTTTGTTGGTGGACTAAAACCAGAGACTTCAGATGAGAAAATTAGAGAATATTTTGGAAAAGCCTATGCACCAGTTAAAGAGATTGAGTATATTACAGAACATTCATCAAATCGCAGAAGAGGTTTCTGTTTTGTGTCGTTTGACAGTGAAGATACAGTAGACAAAATATGTGAGACGCAGTTTCATAATATTGAAGGCAACAAGGTGGAGGTCAAAAGAGCACTGCCAAAAGaagtacaacagcaacaagcCGCATTGAGAGCTGCCGCAGGGCGTGGCATCATCCCCGCACTAGGTACTCTGGGGCCCCGTGTAGGTCTATCAACAGGGGCCTACCCATCATACACTGCACTCTACGGAGCCTTCGGCGCCAATGCCGCTGCCTTTGACCCTGCCCTCTATGGTGCATCATACGTCCCAGGGCTCAGCCCGGCAGCATATAGCACAGCATATCCTGCGGGATTCCCGGCAGCTTACGAGTATGGCACATATGGTGCAGCTGCAAGTCGAGCTGATGTCCGGTACACAGATACAAGTGGCTCCTTCCCACCGCAGGGAAGTGGTACTATGGGCTCAGATGACACCAGTCCCTCTCAACCGCGCAATACACCTTTACTCATGAGGTTGGTTAGAACCAGTCCCCACAGAACTTCGCCCGAGTAGTTTTGGACCAATCGCCGCTACATACGCACGTCACGTGTTTCACCCGTATGCCCGCTGACAACGGCAACGCACATGCCCGCGAGAACTAAGGTGACTATTGAACAATGTCACGTTTATGTGAAGATTTCTAAGAGACGACGATATTTttcctgagaaaaaaaaaacaagagatgGTGATATTCTGATAGTATCCATTGATGTTGGTGTACAGCGAGGTCACTCTAGTGGTGATATACGAAGCTAACTTTCTGCACCAGTTGAGTGCAGTGTGAGCACTACAAGGTGAATGAGGATAACTTATCAAGTATGAAAGTGCTAGGTATGGAAAACATTCATGTAGCCTGCATAGCTGGCGACGTCTTTGAGTTTCAgagcagttttttttatcctggAATACGCGAAATCGTTCGtagtttgttaaaaaaattgctCTGAAACTCAACAAGACCGCTAGCTACACAGGCTACATTCATGGGATTATCAAAAACACGGAATTTACAAGCACATGTAGCTGCACGCCGCATCCCATTAACACGGACTCTTGCTGCAGTGAGTGAgtgcccttgtcagccacacctttgttatttcaACAAATATCGAGAAGCACACCAAAATAAAAGGTTATGCTTCATTTAACAAATTAAATTGAGAATATCGCAATAGCCTCAACACGTACTTTGCCAGGCAAGCTACCGGTTGACAGACTCTTAACACGTACTTAGCTTGGACGGCAAGCTACCTGTTGACAGAGGCtctaaaaagttttttttatcccgGTTCAGCCTCGCTGTCAGCCTTTAAAAAAGGGATAACCGAATGTGTGGTACAAGACCTAAACATTATGAAGCCTTGACGATCAAGCCACAAGCGAGTTATTTATGAGGGTGTCTAATGTGTCCGTGGCAGAGCGGATTATGATCCCATAGCTAACCATAACTCGCGAGTTGATCGTAGGTGATTTATGAAATCTTCTTTTCCGTCTGCACAATTAGCTCACAGGACACTTAGACTTTGTTACGCCACCGGAGACTCAAGTTAATGGGATTTTATTGTGTTAGTTTATAGGTAGGTGTTTAAGTATAGATAGTAATTCGTAAGTTCCTTGCACAAAGTCTAGTATTTCTTTTGTTAACTCTTTCGAGGTCTTCCAAAGTTGCACCGAGTGTTAAACGCTTGGTCTCCCTTTATGGTGGAATTCATTCGCCATATTCTGAGATGTGCGCGACAACAGGATGTTACAAAGTGGCCGATCTTTGGGAAAGGAGTAGCTGGTTAACGCTCGCAATCTGTGATAACATTGTATCGTGTTTCCTCGGCTCCCAATTCCAAATGAAGATTATATAGGCTTTAGTTGCGCCACCATTCATATTGCGGCGTTGCAGCTTACACTAGGAAGACACGTCTTGACGCAGAGGTCCTTCCCAAAATGAGAGATACGTAACCTGTAAATTATGCTTTGCCAAAATTCTAGTCTGTTAGCCCTctctcattattttttttttggtgggggTGATGTTTTGTTTCCTGGTGTTATTTTTATACCCCGAACCCTCATCTCATTCACAAACGCACTGCAATGATCGATCAACTATCTTTCCGGCACTGCAATGATCGATCAACTATCCATCCGGCACCGCAATGCTCGATCAATGCTCGATCAACTATCTATCCGGCATCCTGTTGTTGCGCACATTTGAACCCCTGCGCTCACGTGAGGCTTTATTACACGTGAGGTTTATATGCACGTGAGGATTGTCTAACCGTAAGGTGTTTCTATAATGTCACGAGAGGCGTTATTACACGCGAGGTTTATATACACGTGAGGTTTGTATGCACGTTACACGTAAGGTGTTTCCATAGTGTCTAATTTAACACACGGTCTAACACATATGCTAGACCGGTTGAGTATAGAATTTCACATGTTATGTTATCCTATTTAGAGTAAAGTATTGGCAAGCTTGCCTTTTATTAGTTAATGCTAATTTTCTGGCGAATTTTTGACTTTGATTCGCCCGACATTGGCCTAGTCGTCAAACGCATCTTATTGTTGACCCAACATTAATCCTGCTATATATTATATGATACTACTATTTTCTAGCGAGCATTCTGATCAGTTCATGTACGCGCTGGCAGTATTTTTCTAGAGACTCAGGGTATTATTTTTGGCCTTTGAACTTATCTACCGTTAATGAAAGGCAAGCTTGAACTGTGATGTTCTTGTAGTAAGGATCGTAAGAGGTCGTAAGGATCGTAAGAGCATCGTAAGGATCGTAGGGGCGGCTTTGGGCGTGGCATAACGGCTATATGGTCGACGTCATCTTTTCTTGAATGCGTATCCTACGATGACCCCAAAGACCTTCTGAGTAATTCAATGGTCAGCTCCTTATTCCTGTACCAAAAACATCAAATCGTATgcaagttttctttttatctttaGAGTTTGGTTGATGTAATACAGTCAACCTTCGCGGACACCCTCGGTGCAGTAAAATTTAGTTCCGTGATAGCAAGAGTTCGTAAAAACGGGGTTTTTCAGTAATATCTTTGTGTTCGGTCCTGTCGGGGCATGTATTCCTTGTCTTTTATAATGAATGCGGGGTGTCCCTATAACATGGTTTACATAATATCAATCGGGGTGTTCGTAGTAACAGGGTGTCTATAAGATGACAGTTGATTGTGATCCATATACAAGTTGATGATAGCTTAACTAGCCCAAGTGGAAAGCGTCCATTTTGAATTACCCAGAAGGCCCCGGGAACGTAGTTGGATCTTTTCAAACTCTGGGTCGACTTGTGTGACGTGCTGTGACGAATCCTTTTTCGGCGCAAAATTCAATGCAAATCGCACGTTTGAGAATTGAAGTAAATCCACTTGAATCAATGTGAAATTCAATCTTTCCTACAATGAAAGCGGCTTCATTCTAGTGctaaaagatgaaaaaggcTATGAATAGATATAGTttccaaaattttatttcaaatgtgACCAACAATTTCATACAAGTCGGCCCAAAGGGACGGATCACAAGATCATGCCGCGCCTTGTCTAATTGTCCGTCATATCCAGTCGTGGTCTAAAGGACTAAAAACTCGTGTTGGATATAGTACTGATGCCGTGTGACGGTACTTCTAAGTCTATTGTGTTCAATAAAAGACGTACACTGCC

Protein

Uniprot

Uniprot term	Description
Q99020	Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus OX=10090 GN=Hnrnpab PE=1 SV=1
Q99729	Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens OX=9606 GN=HNRNPAB PE=1 SV=2
Q14103	Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens OX=9606 GN=HNRNPD PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14411	MSI; RNA-binding protein Musashi	-	Messenger RNA biogenesis	ko03019	deepkoala