Gene detail

Detailed information of XP_032235367.2 in Nematostella vectensis

Genomic Location: NC_064047.1:10235187...10240741
NR annotation: XP_032235367.2, dnaJ homolog subfamily B member 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032379476.2

ATTTCATGTCTGCTTTCTAGAATGTTCGAAAAGGGGGAAAATGGTTGGCACGTCGCAGCGAGGGGATAGATTTGGAAATGCTACGATCTAGAGTAGCGGGATCGGCTCTGTCGCTCTAACCCGCGTTAAAACATTGTATATATCACGAAGAACCACTTAACAGGACAGTCCTCAGTCAGTCAAAGAATCTAACGGCATAAAACTTCAGACATGGGACGAAATTATTACGCTATTCTTGGTGTACCTCGAAATGCCAGCGACGATGACATCAAAAAAGCCTACAGAAGACAAGCGCTTATATTTCACCcggacaaaaataaaaactctgGAGCCGAAGAAAAGTTTAAAGAGATATCAGAGGCGTATAAAGTTTTAACTGACCCGAGACAAAGAGACATATTCGATATGTATGGCGAGGAAGGTCTCAAAGGAACTAGCGATTCACCATTTGGTGGACCGTGTGGTGGTTTTGGATTTTCCTTCTCCGAAGATCCAATGAAAATATTTGCAGAAGTCTTCAGGGATGAGGAACCGTTTAAAGAATTTGAAGACTTCTTCATGGATGGACTAGGCTGTGGATTTCAAAAAGTCTTCCAGACTGGTAACTTTAGCAGCTATTCAACTGGACAAAAAGGGTTTGGATTTGAAGGAATGGACTTTGGGCCTGGCCCAGACCCATTTAAAAAGGAAGGTCCAATTCAGGAACCAGCTGTCGAAAAGATCCTCCCAGTTTCACTAGAAGAACTATACATAGGGAGTGTTAGAAAGTTACGGATAAACCATCAAGTACTGAGTATGAACAATGAGTACATCCGGGAGGATAAAATTTTACAAATTGAAGTAAAGCCTGGCTGGAAAGCAGGAACAAAAATAACTTTTCCCAGAGAAGGTGATATGAAACCAGGAGTTATTGCATCAgacattatttttatcattgctGACAAGCCACACCAGTTCTTCAAAAGAGACTCTgaaaataatttaatataTGTATCGAAATTAACTCTGAAGGATGCGCTTGTTGGCTGCGTAATTCAGGTCCCAACAATAGACGGCCGTGTATTATCTATCCAAGTAAATGAAGTCATAAGACCAGGGATGCAGAAGAGAATTCAAGGCGAGGGACTACCATTATCGAAAAATCCAATAGAAAGGGCAGATCTGATTGTTACATTTGAAGTTGAATTTCCTACAAATCTTACGGGAGAGCAGAGGGAATACTTGGCATCATTGCCCTTTTAGGCTATTTAGaaattattgttatatatatattataagtaATGTAGGAGAGATATTCATACctctaaatgtttttttcacagAGAACACTGTTTATAGTCCAGgagaaaattacttttatccAGTGTTTTGGGACCTTGCTTTTTTTGAAATCCGCTTAGACTCCCTGTTAGACTGCTAGCCATCCCTTCTGTGGTAAACATTTGTGGAAGGTGAAAAAGTTTACTACTTTAGAGCATGCACATTTGTTTGTTGTTAAATTAAATTACCAGGTTGAAGAGCACAACATCTTCATAAACCCATGTTTCTATCAGAATTGATTTAGAGGTATTAATACTGAACAAGATGGAAATCTTCACGTATACATTGTTTTGTCCATAAACTTTTATCcaaaatgattttattttataattgcGGATCATTATCATAGCCAGTTTCACAATCTAAAATCTTGTGGTCACTCAAGTGAAATGTTAGTCAGTTGCTGTGGTGACTGTTTTTTATCACAAATACTGCCTTTTTACTCTTTGGCCCATagctttttttctctaaaattGAATTAATGATAATAGTAGCTTATTGCAGTTAGGGAAATTTGTGGTGTCTTTTTAgagaataatataatattttactGCCATCAAATGGATATAATTTACTAGGTTTACAGTTATCATGTGTTTGAATAAGCAGTCACGAAGGACTAAACGATTTGTAGATACTATAAATTATTGTATACATAGTAAATAtagtattttattttagtgATAAGTTCTATTTTTCAAAGTGGCTGGAATAACAATGCTTGCTGGTATAATTCTTAAGGCCAATTCTACATTAATTTACAAACAACACAAGTAGCTGTGCAATTCCTGCAATTAGGTCTGAGTTTGTCCTTTCAGGCATACTAAGGGCTGAAATGATGATTCTTTTAATGTAACAAGAAACTTATGCTAAGGAATTAGCTTAAGGTTAagcttctatttttttttaaatagtttattttttattgaccTGTAGTCCATGGATAATTCGAGACTTACCCATACGACATTTACTCACTGTAACACTAACAACCACCTCTAATACTGATGCTAACCGTTGATACTTCAATGATTACAAAAgaaccaatatgagatatgcACTTCCGTGCTACAACCCTAATTAAGACTACTGACGATTATTAAGGTCGCTCTAAAGAGAGTAATGAACTTTTATGACAATCCAGACAATTACCGCAATAGTTTGATCACCCAGGCAGGTCCAGTCATTATTCATGGCCGCTTTGATTGTATTATGAGGGGTTAAGGTGTCTGTTTATCCAAACGAACATGAAATAACATACATGGCATGTGTGATACTCGATGTACCGTGTACATTCAGTTCTATATCACTAAATttgtaatttaaaaaattattgaagGATAGTCTACAAGTTTGTCAAATATGAGTGCAGGCACAATAAAGAACACACTGAAGAGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QYJ3	DnaJ homolog subfamily B member 1 OS=Mus musculus OX=10090 GN=Dnajb1 PE=1 SV=3
Q3MI00	DnaJ homolog subfamily B member 1 OS=Bos taurus OX=9913 GN=DNAJB1 PE=2 SV=3
P25685	DnaJ homolog subfamily B member 1 OS=Homo sapiens OX=9606 GN=DNAJB1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001072 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01556 all species →	DnaJ_C	DnaJ C terminal domain	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR002939 all species →	Domain	Chaperone DnaJ, C-terminal	Interproscan
IPR051339 all species →	Family	DnaJ homolog subfamily B	Interproscan
IPR008971 all species →	Homologous_superfamily	HSP40/DnaJ peptide-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24078 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032235367.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032235367.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

135.1Max TPM

27.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.80	17.66
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	6.25	8.06
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	54.60	74.90
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	33.62	37.99
whole 6 week old aboral regenerate · regenerate uncut	3	3	17.95	35.38
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	63.56	135.09
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	4.78	8.05
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	30.05	60.80
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	27.81	53.07
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	36.15	38.79
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	41.98	52.35
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	6.89	10.50
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	17.39	32.63
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	26.81	36.19
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	7.58	15.11
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	57.84	74.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.66
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.14
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.60
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.06
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.57
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.11
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	74.90
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	66.23
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	22.66
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	37.99
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	33.38
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	29.51
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	35.38
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.71
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.76
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	135.09
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	29.41
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	26.19
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.05
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	6.28
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	60.80
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	21.08
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.27
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	53.07
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.71
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.66
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	38.79
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	36.16
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	33.49
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	52.35
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	49.68
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	23.92
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.50
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.16
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	32.63
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.36
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.18
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	36.19
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	23.79
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	20.46
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	15.11
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	7.65
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	74.85
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	73.56
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	25.10

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.