Gene detail

Detailed information of XP_032235452.2 in Nematostella vectensis

Genomic Location: NC_064047.1:8852081...8856046
NR annotation: XP_032235452.2, vicilin-like seed storage protein At2g18540 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032379561.2

GTTGCTACCGCTGCAATCAAAACAGTTCACAGTTCAGCAAATGCGACGCCGAAGAAGTAAAAATCTCATGGCGAACGACTACTAAAAACACCGCTAATACAGGCAATGGAGAACGACAATCTCAGCGAGGCGGACTGTGGAGTGCAAATATCTATCACTAATGCGTCAGCCTCCGAAGATGAGCTGGAGTCCGATCGTCCTCGGGCTGATGAAAAAAGAACGATCGATCCTGATTCCGACGAGGAATTAGAACGCGAAATTGAAAAAGAATTAGACATAGACGAGAATGGGGATGATAATGTCGACCAAGAAACTGCAGCTCAGCAAAAAGAAGACGAAGAAATAGCAACATCGTTTAGTAATGGAGTCTCCTTAGAAGAGCAAGGTGGAACGGAAAATGGCGCCGAAAACAACATTGAGAGCTCGAACGCCAACGATGGCGAACaggatggtggtgataataataGTACGACTGATGAAAAACCTCCAGTTGAAATGATTGGAGACAGGGTTTTAATTGAACGAGATGGAAAATTTGAGTTGGTAGATGCGAGTGAGATTAAGGCAGAGTATTTTGAAATGCTTGGGATTAGTCCagagaaaaaagacaaagacaGTGACGATTCTAGTTCTAATTCCAACACAAATGTATCTTCAGATGAAAAATCACCTAAGGCGGATAGAAAAAGACCTAAAACGACTTCACTTGATGAACTAAAACGTAGaagtaaaaaaacaagaagCCCTGAGCGAAGAACAATGAGCGCAAAGACGCGTTCGCAAAATGACGAATACTCTCATTTAAAATCACAATATGGTATGACTGAAGAACAGTTAAAAATCAAACGTAGAAGAGAGGAGGCGATTGCGAAACGAAAGAAAGAAGAGAAGGAAAgagaggaagaagaaaatcGAAGAAAAAGGGAAGAAGCAGAGAGTGCATTTCAGGCATGGTTAAATGCTAAAATTGAGGAAGCAAAAGAACGCAAACGACAAGAAGCCTTGATGAAAGAAGACCCTAAACTGAGGGAAGAGCGGGCAAAAGAGGCTGAAAGTGCATACAATACTTGGCTTGAGACTAAAAAACAGCAGGATAAAGTGGCCAAGGAATACGAACGCAGTAGAAAGTCTGAGGAAGCATCCCAGTATGTCATACGCGATAGACAGCTTTGTGATGAAGCTTTTCGAAGATGGACAAGAAAGAAAAGTCTAGCAAAGAAAAGGGAAGAAGctctaaagaaaaagaagaagaaaaacaaacctAAGCTGAAGAAAAAAGAGCCGCTACCACTTAACTCGAAGAACATAACTCACCAAGAAACCCTTAAAAAACAGTCAAATGGAAAACAATAATTATCAGGCGTACATCAAAAGCGACTTGGCGTCAACTTAGTATTACGAGTACTACGGCTACCGTAACCATGTGGTGCTGTGATGAAACAGAAGACAAACAGCAGCAAGATACAAAGGGAGAGATGCAAGTCTAACAACGGTCACAAACGTGTGGTCCGGACAGCAACGTTCATTTTGGAATGTTAATGGGCGTGTGCTGTTCTTAATTCATGTTGTATTGGTGACCAAGATAGCGCGTGGCAAACGATCAAGGAGAGACTAAGTCTAGAATGAAGTTTTCTACATGAATctcaggggaggatctaggggtgggccgaGCGTGCCCCAGCTCCCTTAATTTCAGATCCGGCCTCccttcttgaaacccttgctgctccgccccccacccctcccccctggatCTCCTAGATCCGCCCTTGAATCATAGGTTGTTTGAATCTTAGGTTGTTTACGGTGCTCCTGGGAACAAGCTTCTGTAATACATGTAAAGAGTCTCAGAGTTACACAATTAGTGTGGCCCAAAGGAAAAGACAAGAAACTAATGAAATAGCCACTTAAATCCCCTTATATCTAAGGAGATATGGACGCCATAACGTAGAGGTCGATGATTGCTTGTACCCGCTGTATAGAAAGCCTATGATCATATGGCGGTACCCCCATGTAGCGGCCACTTTCAAAAAACCTAAAATATTGGTCACTCAAACATTCCAATTTTTAAATACCTACTTAAAGCAGTCATGGCCACCATGTTTTTGCTGTATTtttacctctattaagcggccagaAAATCCTTTTATTGGGTCGGAGCACCCTTTGGTGTCAGTTTAATCAAGAAATGGGATATGAATGGATAATAAAACAGAAGGCTCCTAGTCAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007805 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_032235452.2. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR026687 all species →	Family	Coiled-coil domain-containing protein 181	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14320 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 181	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12046	TNNT3; troponin T, fast skeletal muscle	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032235452.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

26.4Max TPM

10.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.79	12.81
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	10.13	13.14
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	11.39	15.56
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	15.28	15.71
whole 6 week old aboral regenerate · regenerate uncut	3	3	15.42	26.41
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	16.84	24.09
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.97	13.18
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	10.12	15.18
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.66	15.27
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	13.14	24.16
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	11.12	15.54
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	6.00	9.82
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	11.46	17.10
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	4.77	14.30
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	11.57	13.17
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	7.24	16.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.81
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.39
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.19
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.14
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.65
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.61
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.56
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	11.26
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.36
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	15.71
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	15.47
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.65
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	26.41
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.70
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.16
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	24.09
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.56
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.88
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.18
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.73
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.18
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.21
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.98
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.27
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.71
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	24.16
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.40
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.84
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.54
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.96
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.87
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.82
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	8.18
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.10
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.64
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.62
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.30
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.17
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.75
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.79
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	16.75
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.97
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.