Genomic Location: NC_064047.1:8435949...8441462
NR annotation: XP_032235474.2, dehydrodolichyl diphosphate synthase complex subunit DHDDS isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5510461 |
| Transcript |
| rna-XM_032379583.2 |
| Protein |
| XP_032235474.2 |
| UniProt accession | Description |
|---|---|
| Q86SQ9 | Dehydrodolichyl diphosphate synthase complex subunit DHDDS OS=Homo sapiens OX=9606 GN=DHDDS PE=1 SV=3 |
| Q99KU1 | Dehydrodolichyl diphosphate synthase complex subunit Dhdds OS=Mus musculus OX=10090 GN=Dhdds PE=1 SV=1 |
| O14171 | Dehydrodolichyl diphosphate synthase complex subunit SPAC4D7.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4D7.04c PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005865 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01255 all species → | Prenyltransf | Putative undecaprenyl diphosphate synthase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001441 all species → | Family | Decaprenyl diphosphate synthase-like | Interproscan |
| IPR018520 all species → | Conserved_site | Di-trans-poly-cis-decaprenylcistransferase-like, conserved site | Interproscan |
| IPR036424 all species → | Homologous_superfamily | Decaprenyl diphosphate synthase-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10291 all species → | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016765 all species → | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups | Interproscan |
| GO:0002094 all species → | Molecular Function | polyprenyltransferase activity | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0016094 all species → | Biological Process | polyprenol biosynthetic process | Interproscan |
| GO:0045547 all species → | Molecular Function | dehydrodolichyl diphosphate synthase activity | Interproscan |
| GO:1904423 all species → | Cellular Component | dehydrodolichyl diphosphate synthase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11778 | DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase | EC:2.5.1.87 | Prenyltransferases | ko01006 | deepkoala |
Transcript abundance of XP_032235474.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
