Gene detail

Detailed information of XP_032235665.1 in Nematostella vectensis

Genomic Location: NC_064043.1:12020467...12028933
NR annotation: XP_032235665.1, orphan steroid hormone receptor 2 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032379774.2

TGAATTAATTGACAATAGCCGTTTGACCTTGAATGTATTGACTGCATCTTGCCCCGAATATCGcggaaataacaacaacaagctACCTATGAACAATTTTGGACTTGCTAAATGAGTTTGTACTTGCAAAATTTTCAAGGTTGTGGAAAAAAAGTCAACATTTCAGTTGGAAAGATTGAACTTTGAACCATGACTACTATTTCATCAGACCGACGCGTCATCGAAGACAAATGGCGTCAAATGACTAGTCCTGTGTTTATTCGATCAGAAGCCCAGAACCCATCGCACACACAGATGGTTGCAATTCCGAAACCGATTATTTGGGGCAACTGCAAGGTTTGCGGAGACAATGGCACAGGAAAACACTACGGAGTCGTTGCTTGCGAAGGGTGCAAAGGTTTTTTTAAAAGGACCGTTCGAAAAAATCTCATCTATACATGCCGTGGAAGCAATGACTGTTTTATTGACAAGGTCCACAGAAATCGCTGCCAGAAATGTAGATTTGTGAAATGCTTGACTGCGGGGATGAAGAAAGAAGCTGTACAATGCGAAAGAAAACCATTGGCAGCTTCACAGTTGGTTCGCCAGCAAGAAACACCCGTCATTACATCAACAGAGGAAAGAGAAGATCGGGGCTATGCTAGCGAGAGCAACTCCGAGCAGTCACTGTCCCCGCCCGCCGTCCGTAACAACCCCCGCCAGGAACACAGAGAGCATGTCGCTGAAATCCTTGTCCTTCAGACAGAATTCAAAGTAAACGTCCCCTCCCTTGCTGGGGTCCAAGTGTTTTCCATGGACTATGTCTACGAATTTGCTACAAGGCTGTTATTTGTATCCATCGATTGGACTCAAAGCATCAGTGCGTTTCGGGCGCTTCACAAATGTGACCAAATAGCCCTCTTGTGCAAGACATGGGCTGACATATTTTTGCTGGGTGTCGCTCAGTCTATATCTAATTTTCCACTCTCTCCACTGCTGTCGCTAGCGGCGAAAGATATTCAACAGAGTGAGGCGCAGGACCCCAAGCCCCCGAAGAACATTCCTGGACAAAAGAACACGTTCGAGAAGATTATTGCCATTAAGGATGTGATGTTCAGCTTTGAAAAACTTAACCTAGACGCCACTGAGTTTGCGTACCTCAAAGCTGTGGTTCTCTTTAATTCTTCAGATCCGTACACCTGTGTTCAAGACCAGAAACAAGTAGACAAATTGCAGGAACAGTCTCACTGCGGGCTCAAGTCGTACATTGATTCCAAATACCCAATAGGCAACTCGGGAAGATTTGCTAAGATTCTCCTCAGACTCCCCTCTCTACACCTGATCGATAGATTTGATGTGGAGGAGCTTTTCTTCGCTCCTCTTCTTGGTGGAGTCAAGATCGAGAGTATAATGGAAAAGATCATACTGCGATCTTCAACGTCGTCATTTTAAAgtgttttatgtatttttttagattattaGGCCTCGTGAAAACAGCACAAGCATTGCTTTCAATGCTTGCACTGTTTCGCATACAATGTTTTGAGGTGTAGTTCAATAGTTCGCCAACATTCCGTTACCTTGTAGTTACCGGTGTCAGCAATGCTGGCTGATGATGGCGCTGTTTGCACCGGGCTTTATGTAATTGAATATAaattgctttcaatatttcacataaaaaaataagtgtTACATAATCTTTTAGGGTGTAGTAGTTTTTTATACAATTTTTCTGAGGTATTATTTGTATCATCCAAAAGCGTGCAAGTTTCTTCATTTGAAGGTTTTTTTGTTCGCTAGCAAATCTTTTGCGATAATCAGAGTGTTAATGTACATTTGGATTAGCAGttgttcaaaaattataaccATAGAATTTGATCTTGTTTGTAAAAGTCTATGATCCTGATTTTCAACAAAGAGTGTTTGGATTGGTGcgtttctgattttttggcGAAGTATAACTATTATACTAGTGAAATATTCGCGCGCAAACTTTTTTTCGCACCGTTACTTGTTTTTTGTCGACTTCATGAAACTTCAGCGGCTTACCTGAGTAAAGGTCTAGTACACGCGCGTACcgactttttggccgccaagggggtgcgcgcgcaccctgcgcatgTTCCTTTCTATTGCTATTTCTGTGTTTTTAAAACCAGACGCCCAGAGAATGGAAGAGTGGCATTTTATCGGCAAATTTGTTTGGGAGTGAAAAAGTCCCCAAGTCGCTTCTCCAACATTGTCGTTTCTCTTTTCAAATGTAAGTAGTTATTTGACTTGTTTGTATGTATATATTGTTAACATCTAGTTAAAAACAAATCTGTGAACATGACCGTCAATAAACAGCGCACTTGAACACATAAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q26622	Orphan steroid hormone receptor 2 OS=Strongylocentrotus purpuratus OX=7668 GN=SHR2 PE=1 SV=1
Q06726	Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio OX=7955 GN=nr2f5 PE=2 SV=1
P70052	Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis OX=8355 GN=nr2e1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	RXR-like
Transcription Factors Family	SF-like
Transcription Factors Family	THR-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR050274	Family	Nuclear hormone receptor family NR2 subfamily	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24083	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan