Gene detail

Detailed information of XP_032235701.2 in Nematostella vectensis

Genomic Location: NC_064034.1:5125338...5130097
NR annotation: XP_032235701.2, sphingolipid C9-methyltransferase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032379810.2

ttttcaggtagTAAATATCGAATACACGGAGGATATTTGGGGTAATGGGACGGGCTACTAGCCCCTCCCCCGTTGTTTTCTTCGCACAGCTGATTTGGCTCTAGACACGTGTACACAACAGTAAAACTTTGCACTTGTGCCCTTCTCTTTGTCAGCGCTGCTTCTCTCGGCCGGTAAACCAAAAAGCTCACCGAACCCAGGCGCAGTCATTCAGAACGGTACCTTCGCCTCTCTACTCGAGAACCGTATCATGGCTCACGCTCAAAATGGTTCGGTCGGGAACTCCCCTCGGATTTCGTCGCTCGAATCGAGAGATCAACTGGCTTGGAAGAAGGTTTCCTACACGACTTTGATTTCTCTCTTGGTCGGCGTCCCAGGCGTGGTCCAGTATATTTCAGGCCTTCCCTGGTGGGTTTACCCTGTCACATTCCTTCTCTGCCTTCTGCCGACTTTCGGTGCATTTATGATAATTTTTAACCGTATTTGTGTCGGTGAACTTGGGACAAAATGCAATGTGATGTCGAAATATGTGAAGTTCAACGACCCTTCGCTCGAGAAAAGCTACAGCAATAGAAAAATCCCCATCTATGTGTTGTACGAGTCGTATGCCGACGGTAAGCTAGACTTCAAGATGGAACCGCTACAAGCTTTAGAACATCGCAATGAATTCACTACCTACGAACTTGGCTACTATCACTTGaaattttttctttgtaattTTGTGCCGGAGCTGTTGTCGCACTCGAGGACTCAAGATTGTGAGCAAGTCCGCGACCACTATGACCGCGGCAATGACTTCTACGAAGCATTCCTCGGACCAATGATGATCTATACCTCTGGCATCGTCTACAACGAAGATGAAAGTCTAGAAGATGCTCAGCGAAACAAACTCAGTGCCGTATGTGAGAAAGTACAGTTGAAAAAGGGTGACAAGCACTTGGACATCGGGTGCGGTTGGGGTACCCTAGTCAACTATGCTGCTGAAAACTATGGGTCATACTCCACGGGGGTGACTTTGGCTAAAAACCAGGTGGAGTGGGGTAACAGAGTTGCCCAACTGAAGGGGGTTGAGAACCGTGTCAACTTCCTCTGCTTAGACTATCGTGACATTCCAAGGACCAAGTACAACAAAATAACGTGTCTGGAAATGGCCGAGCATGTTGGTATCAGGAATTTCCAGTCATTCCTTTGGCAGGTGCGAGAGATGCTGGAGGATGATGGCGTGTTCTTCCTGCAGATTGCTGGCCTGCGTAGGGCATGGCAGTGGGAAGACTTCATCTGGGGCTTGTTTATGGCCAAATATATCTTCCCAGGTGCTGATGCTAGCTGCCCCCTGGGTTGGTTTATCACTCATCTAGAGCAAGCAGGATTTGAAGTGCAAGGCACAGAGAAAATTGGCATCCACTACTCATACACCATCAACCGCTGGTATGAGAACTGGATGCGCCCAGAGGCCCAGGAAGCAATGGTAAAGAAGTATGGTCGCATTGCTCGCATCTGGAACATCTTCTTGAGCTGGTCAACCATTATTGCTCGCCAAGGTAACTCCACTTGCACCCAAATTGTGTGTCACAAGAACCTGAATGGTTATGACCGTACCAGGTTTTACCagaagaaaagaaactaagGCAGATTAGTTTACATCAAAGGGTTACTCTAAGCTCTTACAAACCTGTCAATTCTGAAATTTCAAGTTGTTTttggatttatttttattttgaagaaAGCACCCTTACTCAGTAAATTAGTATAACTAGTTATGAATTGAAAGgtatttattgatattttaatATCAGAAGGAATTCTAAAATATATGACAGAGTCTTAGGCAAATTCGAATTCCTTTTCTATACTTTTTACTTAAGCCTAACATTAAAATAGCTTAGAAGCCTTATTTCATAAAATCCCAATTTCATTACTTATTTACATATTTACTTAGTAGGAGAGTTCAAACACTGACTGGTTGGTCTACTGTTTTATATATAATTTAGTGCTTCATCCTTTAATCTTTCATAGCGTTTTTTGCCATGTTTCAATTGCAACTGACCAATATTAATACTTTTCATAATTATTTAGGTGTGACTTTAGCGATTGAGTGATTTACAAACGCTTTGTTTGCTTTAAAAGATTCGCAATAGTAATTTATTATTGATTCATGGTATACTGTGGAATTGCATTTACCAATCAAAATTAAGATTTTGTTGGATTCCCATTTAAGCCAGAGATGCTTCTATgtaagaaaaaatattatgaCAAATACCATATGTTTATTGCTTGAATACTTTCAAATCATAACTACAGACTGTCAATCAATTATGAATTATATATGAAACTTGGGACCAGATTAGAGAAACAAGAAACATTTCCCAATCTGTTTGAAATACATCAAATTCACACTGTACCAAGTGTACCATTGTAGATTTCATACCATCGCTTTTGAGTGTTGCAACACCTTCATTTCCTATACATATCTATAAACAAACCTGACAATGTCAAAGCTTTAATTATAGTCAATTTTTACCAGGTTATTAATATTATCTGATGTAATCACATACATTATAGTATAGTTTTTGATTCAGGGAATGGTTGATTGGAACAATAACTGATTATCatattatttctttatttttatacgCCCAGGTCATttaatttatgtttttttaatacacGGGAAATTTGATTTTTGATGGATCAAAATAGTAATGGTGGTTGTCTTTCCATGTTTTCCCCTGAtgacaatatttgattatCACATGTGGATTATCAAGAGCAATGAAAAGATTGCAGATTCTAGAATGCATATCTTACATTAAATTGTAGTCAGGAACTACAATTGTGATATGTATAGATGTTACTAGAAGTTtgatatttcaatatttttgcTATTTAGTATATGGAATTGTAAATTGTGTCAGTTAAAGGAACAGAATGGTGAATTGGATTTGCTTTCAGGGACAATCTCAACTTAAATGGTTCTACATTAAGTAGCTACCTCCATGTTAGTTTCCATGTGACCATTCCATGTTTACAAATTATAGGACTTCCATTGGTTCAGACATCTACTAGTTAATGTTCTAaattaaagatattttttaaatttaaatctCATCTTCTTAAATTTATGTTATGTCTGTTCTTTTGGAATGTGTATAATATATTGGTATCCCTGGGTTCTATCTACAAACAAATGTTCATTTTCACTATAAATATTTGGGCTGTACAAATtgaaaaatctttaaaaatataGATCCTGTAAATTAAGTAAAGATTTGCTAGTAGATTTCATATAAATGTTTTTGGTTAAATATAAAGACTGTTAGAATaacatatattatatattagtataaatccactcacatactaccaCGAATCTCACCAATTGATTTATTCCCATACTCACTGTCTATTGAGCCATAAATAGTGAGTAGCGAAAAAGTGGCGACAAAAGcggttatttattataaaaatcatttatttgaaggtagtatgtgagtggatttagaCTGAAACAATAAGACTACTTGTtctcgttttctatgagtcaaataGTCAACTTGGCACAATGCGcctcgttgactatctattgactcatagaaaactcgaacccactaattgttaaatatattatatatatttcttattgtaaacataaacaataaaaatctCAATATTATAATACTATATTGCAAAGAGCTAAAAACGGCATCAGCCTTCATGTATGAATAATGTATGATTGCAGGCTTGCTCTCATGACTATGTAAGTCATGGTCATTGAGTATTGCACATAGGGGACCCACATAGGCTCGATTTTCAGCCATCGCTTGGCCACATCGGCCATTCGGGGTCCAGGAGACCAGATTGCGGGTTTCACATACTGCAAAATAGCTGGAAATCAAGTCTATTTTAAACAATCATTAAATAGACTGAGATCATTGTAAGAAGAAGATGATGATTAATCCATAGTGTCTATGTAATAAATGCTTGCTATTCAGGCTGattttgtttgtcttttcTTTCACCTCAATTTCCAACTAAGGACCGAATGTGGGTGCCCAGGTAGTAaaggaataataataatgtataAATTTTTATGGATGATAAGTTTTTCTTAGTGAGCTTTGGGAGAAATTTAGTAAAAGAAAGGAAATCAAGTTAGACTTTTTCTTTAGGTTATAGAGTAAGCCAAGCCACTAGcattttattgtattgtattagaACTACTAATAATAGATTGAACAATTTATTGTTTAACTTTATATTATACAGTATATATCATAGTTGCATAAATTTAATGCCAGACATTGGCCCAGCCACTATTTGCTAATGATGTAAGGTGATACCACAGAGATGATGAAGGTTTCCTGTGGCATGCATCATGGGGTGTATATCATTCACCGTACTGTCTGGGTTAAAGTCTGCCAGTGCTCAAGATTTATTGATCATGCTTTAGatcaaaaataatttttagtCTATTGGAATTTTagcaaaaaaagtattttaagtAGATGCCATAAGTTATCTATCCAGCCATCCATAGTGGTTTGAATGGATAAAATGGTACTACTCATCATTATCACTGTCcaaaaatctttagtaaatGTGACTCTAGTATGTAGCAAAGGGTGTAGGGAAAAAGTGTACATATCTAGCAGATTACATTCTTATTTTCAGCTTGCTTTTTAAACAAGACAGACGTTTTTTTATGGACTCGTGCAATGTACACTTGCagatctaataaaaaaaacatcatcaaAGTCCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C4R7Z3	Sphingolipid C9-methyltransferase OS=Komagataella phaffii (strain GS115 / ATCC 20864) OX=644223 GN=PAS_chr4_0465 PE=1 SV=1
A0A1U8QYZ5	Sphingolipid C9-methyltransferase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=smtA PE=3 SV=1
I1RNL0	Sphingolipid C9-methyltransferase 2 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=MT2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008476 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02353 all species →	CMAS	Mycolic acid cyclopropane synthetase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR052290 all species →	Family	Sphingolipid C9-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45197 all species →	SYNTHASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_7G04190)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071216 all species →	Biological Process	cellular response to biotic stimulus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20238	E2.1.1.317; sphingolipid C9-methyltransferase	EC:2.1.1.317	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032235701.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

18.7Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	11.12	12.79
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.19	9.20
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.47	5.43
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.25	8.64
whole 6 week old aboral regenerate · regenerate uncut	3	3	5.61	7.07
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	5.50	5.80
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	13.05	18.74
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	7.34	8.49
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	7.38	9.23
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	6.06	6.11
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	5.42	7.21
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	12.16	14.24
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.04	10.41
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	9.63	11.33
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	4.86	6.11
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	6.86	9.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.79
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.04
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.54
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.20
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.42
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.96
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.43
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.31
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.68
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.64
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.38
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.74
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.07
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.88
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.87
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.80
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.71
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	18.74
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.70
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.71
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.49
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.32
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	6.21
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.23
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.24
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.66
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.11
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.06
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.99
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.21
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.84
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.21
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	14.24
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	12.88
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.36
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.41
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.10
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.62
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	11.33
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.29
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.26
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.11
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.38
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.09
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.90
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	6.14
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.54

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.