Gene detail

Detailed information of XP_032235707.2 in Nematostella vectensis

Genomic Location: NC_064034.1:5567405...5572604
NR annotation: XP_032235707.2, phosphatidylinositol-glycan biosynthesis class W protein isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032379816.2

GTATATTCACTGGCGCATAATAACTAAGATGGCGGATGCGCGGAACCTTACGTACAGAGAGCTGCAGCAGTTATTTGTGAGTAATTTGAATGGCACGACGTTGTCCGAGATTGcggtggttgtttcatcagcACCACTAGCTGTTCTTCTCAGAACATTCCTTGGGGTGACCTTACTTCGGAGTCTGTCTATTGATTCTCCCTTCAAATCAAGTGCAATCATATTACTGGATTATGCTACTTTAGTGTTCCCAGTGCTTATGAACTTCACTATAATGTCAGAGCATGTTGGTATATACTTCATCACCATGGTAACTGTCATGCTCAGCTTGActgtcaccttgatcatcacCAACTCCAATCATGCTGTTCCAACAATGAGCCAGATTTTACAATCAAGGATGTCTGGACGTCAGCCTTTCATCTGCAACTTTAGGGCATATGTTTTAATTGCCACTGCTATTAGCATACTTGCAGtagattttaaaatatttccaCGCCGGTTTGCTAAGGCAGAGACCTACGGTAGTGGTTTGATGGATGTAGGGGTCGGTGCATTTGTTGTTTCCAATGCCATTGTGTCTCGGGAAGCCAGGCAGGCACACAAGCCTCTTGGTGGTATTGTTAAAAACACTGTGAGCTCCATCCGGTCTGGGTTACCATTGCTAGTACTTGGCATGATGCGGTGTGTAGCAGTGAAAAGCACTGATTACCAGGAACATGTATCAGAATATGGTGTACACTGGAATTTCTTCCTGACACTTTTTGTAGTAAGGGTCCTATCTTCTTTTATTGTGTGTATAATTCCTGGCTCAAAGCTGTATGGACTGGCTGGTTTTTTGCTAGCTATACTGTACCAGTACTTCCTGTCTAATCTTGGTCTAAAGCAGATTGTCCTCTATGGTAGCAATAATGATGGTTCTAGAAATGGATTGCTGGATGCTAACCGTGAGGGATTGGTATCCAATATTGGGGACACATTTGCATCATGGATGACGGTGTTTTTTGTGTTGTTCAGTCTGGatgctttgttttggattGGAACTTTGCTCTGTAGCCATAATATCAGTCCAGTATCAAGACGCCTAGCGAACCTTTCTTTTGTTCTGTGGCAGATGGCTTACAACATTCAGCTATTAGCAAGCTTCCTGCTAGTTGACCTGCTTTCTACTGCTGTCCAGACTCTCCTAAGAACTGAGGGCTCACCTGCAGGAGGCTGTGAGAAGTGTTACCCTTTCTACAGCCATTCATCTTTACGTCGCAAATCGATCAAGGAGTGTGAATGCCAGTGTCTCATTGCAGCCATTAACAGAAACCAATTGGTATATTTCTTGTTAGCCAACATTCTTACTGGGGCAGTAAATTTCCTAGTGCAAACTCTGTATTGTGGTACATGGCTTAGCTTTCTTATTATCTGTGGTTACATGTTTGCAGTTAATTTGATAGCTCTTGTGCTGCATAGTTGCAATATAACATTGAGAGTATAATTTGAAGCTTATAGAGCACAGACCATAGGCAATTCTTGCTCCCAGCTTAGTAATTTTATCAGTCTTATAAGAAGTGGTCTCCTTTGCAGTCTCCTGATATGTTATGATCTTGTGGCTCATTTGGGTCACCAAGCAAGGACAGAGGCGTTATCCCTACCAATTATATACACAACAAtatgacaaccttttgttcTTGACACAGGCTCACAGCATTCTGAAACACTCTGCTATCAGATTTGCATAATGTTAAACACCAAACCTTGAAAAGAAAACCACAAAGTAGTATTTCTTGGTTTTCCTGGATTTCTAACTGGGGGGCATCGTTCTAGTATGTATTTCAGCCAGATCTGGAGGTCAAATGCTGATTTACTAATTCAGGTAAAGAAGTGTTGGGAAAGCAGTTGTCACTGAGCCTAGGCACAGTCTGACAGAGGTCAGGATGACTGCATATTATGAGTATCCTTCATGTGTGAGTCCCATTTAGATGACTTCTACTGAAATTACTTTGGGATAAAAGGGAAAATATCATAATTTTTCTTATACAGAGGATTTGAGAAAAAGTTGCTTTATTTAATTAAACcatggacaaaaaaaaatctgcaaTAAGATTAATAAGAATATATTGAATAGCTCTTTGCATGATTAGTGATATGCATCAGTCACTTGGAGTTGTTGATGGAGGCCGGGATTTTGGGGGGCCTTTTAAGATGCTCAAGGAAAATTAATCATACTTCATGCGCCAAAGCAATGCTAACTTTTTAAAGCAAAAAGACAGTTGCTGTTTGAAACACATTTATTACGCTTGTGCATTGTTGATGAATAAATAAGTTTACATGGTGTGAAGAATTTACTTagattaataaataaaagataaaatatatttgattattttgatttATATGAGATTTAAACTAATTTAAACTAGATTGAAACACATTTATTACGCTTGTGCATTGTTGATGAATAAATAAGTTTACATGGTGTGAAGAATTAACTTAGATTAatgaattaataaataaaagatttaTGAGATTTAAACTAATAAGGTGGCACATCTATCACAATAACTAAGTGAAACTCAATTGTCTATTTTATGAGATGGAAATCTTCCCTTATTAGTACAAATGTAAAACGGCTTACAAACCAGTGATTTGCAAATTTTGTTTAAacgttttggtatttttttttgtgattgtATAATGGTATGGAAATACTATAATGACAATGgtgtattttgttttccttgaGGACCCAGGGTGCAGTTGTGACCACCACATTTAGAAATAGGGTGGTTTAGTTCCGAGACACATACATGCATTCCTTGCCATTGTCACGCCACATTCAGGGTACCATTCTTTGCATGTTTTAAGTCTTCTTTATGATGTGATTGTGGCAAAAATCAGTGAGCATGCTGAATCAAATGTAAATGAGCCAGTATCCTGTCCATTATTATTGCCTCAGCACACTGTGTGGCCAAGAATAAAAAAGAGCtaaagaagaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSN4	Glucosaminyl-phosphatidylinositol-acyltransferase PIGW OS=Rattus norvegicus OX=10116 GN=Pigw PE=1 SV=1
Q7Z7B1	Glucosaminyl-phosphatidylinositol-acyltransferase PIGW OS=Homo sapiens OX=9606 GN=PIGW PE=1 SV=1
Q1LZA4	Glucosaminyl-phosphatidylinositol-acyltransferase PIGW OS=Bos taurus OX=9913 GN=PIGW PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006624 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06423 all species →	GWT1	GWT1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009447 all species →	Family	Phosphatidylinositol anchor biosynthesis protein PIGW/GWT1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20661 all species →	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0032216 all species →	Molecular Function	glucosaminyl-phosphatidylinositol O-acyltransferase activity	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05283	PIGW; glucosaminylphosphatidylinositol acyltransferase	EC:2.3.-.-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032235707.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

4.8Max TPM

1.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	1.29	3.88
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.86	2.33
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.51	1.62
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.35	2.66
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.88	2.25
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.16	4.76
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.59	2.71
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.13	2.91
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.48	2.43
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.93	1.52
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.79	2.22
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.75	2.74
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	3.42	4.04
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.02	3.06
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.45	3.01
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.78	2.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.88
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.33
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.93
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.32
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.62
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.49
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.41
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.66
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.47
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.92
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.25
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.94
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.44
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.76
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.72
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.71
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.06
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.91
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.74
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.74
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.43
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.00
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.52
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.26
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.22
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.65
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.51
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.74
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.51
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.04
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.68
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.54
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.06
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.01
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.35
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.33
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.