Genomic Location: NC_064046.1:7160709...7184235
NR annotation: XP_032235984.2, ranBP-type and C3HC4-type zinc finger-containing protein 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5510882 |
| Transcript |
| rna-XM_032380093.2 |
| Protein |
| XP_032235984.2 |
| UniProt accession | Description |
|---|---|
| A9JTG5 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Danio rerio OX=7955 GN=rbck1 PE=2 SV=1 |
| Q9BYM8 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=RBCK1 PE=1 SV=2 |
| E6ZIJ1 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Dicentrarchus labrax OX=13489 GN=rbck1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003398 (this species only) |
| Ubiquitin family | UBD|ZnF|NZF · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 activity|RBR · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00097 all species → | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047558 all species → | Domain | Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain | Interproscan |
| IPR051628 all species → | Family | Linear Ubiquitination-Associated E3 Ligases | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR047559 all species → | Domain | Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass | Interproscan |
| IPR001876 all species → | Domain | Zinc finger, RanBP2-type | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR036443 all species → | Homologous_superfamily | Zinc finger, RanBP2-type superfamily | Interproscan |
| IPR000626 all species → | Domain | Ubiquitin-like domain | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR047557 all species → | Domain | Heme-oxidized IRP2 ubiquitin ligase 1, Rcat domain | Interproscan |
| IPR018957 all species → | Domain | Zinc finger, C3HC4 RING-type | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR044066 all species → | Domain | TRIAD supradomain | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22770 all species → | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000151 all species → | Cellular Component | ubiquitin ligase complex | Interproscan |
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0071797 all species → | Cellular Component | LUBAC complex | Interproscan |
| GO:0097039 all species → | Biological Process | protein linear polyubiquitination | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10630 | RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1 | EC:2.3.2.31 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of XP_032235984.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 9.68 | 13.63 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 8.50 | 9.96 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 14.20 | 16.76 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 13.06 | 14.96 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 12.15 | 13.76 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 9.10 | 14.16 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 2 | 6.18 | 10.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 10.56 | 13.01 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 2 | 6.87 | 11.05 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 9.29 | 10.69 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 9.78 | 10.74 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 11.73 | 14.05 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 9.99 | 12.30 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 1 | 3.16 | 9.48 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 2 | 7.92 | 12.90 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 1 | 3.31 | 9.94 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
