Gene detail

Detailed information of XP_032236061.2 in Nematostella vectensis

Genomic Location: NC_064037.1:14085735...14089431
NR annotation: XP_032236061.2, F-box only protein 22 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032380170.2

CACCCTTGTAAACACAGAGTTCCATCAACGAAATCCATCCAATCCATGTATCTTTCCTATTTTTTGTCCACATTGTAGCCGTAATGGCGTCAATTTTAACAGGCAAGCCTCAATCTGAGTATATACTATCTCTTGCGGAGATTCTTGAACTCGTTCTCTCATTTCTTCCCGCTCGAGATCTTGCAAATTCGTCGCAAGTTTGTCGGTTATGGAGAGATACAGTCAGCAGAATTTTTCGACTCCGTAAAGCCAAGTGGACAAGCTATCTCGTCCATCATGGCCCAAATACACCATGCAGCTCTAagCTGTCAATGGATCTGATGATTGCACAAATTGTTGATTACTTGGATAATCTAAGGATATTCCCAGCTGCAGCTATAGTCTTCATCAGTCGATCGGCAGAGTTCTGTGAACCACGGCGAGATGAAGTACGGACCTTAATTACTGCCCTCAAAAGCCGTCTTCCCAAGAGCTGTAATGTGATTGGTTGCGTTGGATATGGTGTTATCGGTTGCCAGGAGAATGCTCCCCCAGAGGAACTTGAAATGGCAGAGGCAGTTTCAGTCCTCTTGATGCCAAGAGTCCAAGGGGTGTCAACCCATCTATTCAACATGAGTTGCACTGATGTTAGAAACAATCGATCTTTTAAGTCACGGTGGGAGAAATCTCTTAATATACCAGcagaaaaacaattaaagtTTGCTCTTCTTTTTGcaaaaggagatatatttaaTCTGGATATCATTGGAAAAGTCGCATCTGGGATTTGGCAGATCAACAGCTGTGAAGATGGTGAAAAATCCAACGTCGTAATCATTGGCGGTCTAGTAGATTCTCTTCTCTTTGTTGATCATGAACTCAAGAATACTGGGGTTATTGGACTTGGAATAGCTGGCCCCAATGTGCATGCAGTTTCAGTTGTTCATCATGGAGAAACACAGATTGGTGTGACTAAATCTTTAAAGCAACTCAATGGTTTTGGGATCCCTTGCACCGACAGCAGTGGTGTGTGTTTTATGGTTTCTTGTGTCGGACGTGGGGAGAAATTTTACATGGCTAAGAATGTGGAATCACAGATTTTCAAGCAAGTGTTTCCATACATTCCGGTTGGTGGTTTCTTTGGCAACGGTGAGTTAGGTCTTGATTTGCAGTCAACGCGAGGAAAGCCACTGAAGGACAGCCATTTTCTTCATTCTTATTCTTCGGTGTTTTGCTTGTGTTCATTGGATTCCCCAAGCACCTCCACAGTGAGACCACTGCTAAAAGGTGCCTTGCAAAAAAGAACATCAGATGAGGACAAAGCAGAAAAACCTTGCTGTAGTGCTGACTAATGAAAAGGACAAAACAAATTATAGATATCTTAATTGGTTGAAATTACCATGACAGTGGTGGTATGTTGCCATTAGGTGATATATAGTATATCAATCccttttccttcttttttatttcttaataGACTATACTGTAAACCTCAGGTgattaaatattgggggcacaatGCAGTAACGTTTAGAAAAATGTTGGCGccacagccatgcccctactggtccttatagtttttgaaaatattgtggggGGATGTGCCGCTAAAGCCCCAACCCCTGCTATAGCCCTGAAGTGTAAGGGTGTCGGGACATTTCTCGTTACTTAGCGATTCGGTTGTTAGGCCCGGGTGCGAGTATCCGGAAACTTCATACTTAGGCGGGAAAATCAATTGGTGGAAAAACCATTAACATGCGAGACATTTTTAGCTACTTTAACGAACGCCCGAAACTGGCGAGAAAAACGTAATAAACAGCAAATaccataaaacaaaaatgaaatagCATGATTATTCACCTAGGGCAGCTAATTGGCGACATTCGTAGATAATTTTACCTCCGGTTTACGTTTCTAACTCTATAATCTTTGTAAAGAACACACTCTGCACGATTTTTTTAGGCAGATAATATTTACCTAGTTGCCCTCTATAAAACTATGCATCAATTTCCCAATATTTTAAGAAATTATTCAAATAAGactggaaaaataaaaactaaaattgtgaaaattttattatttggaaGAATCGAAAATGCATACGTAATTTTTTAGGCACCCTCCATCAATACTTCACGCCTGATGACATCATCAAAATTTAGAGATTCATAAATAATGATACGCCTAAATTCATTCCATTTCACAAAGGTTTGGCAGATTTACAACGTCTTGAAGTTTTCCTAACAATGGCCCTCAGAgaaatgtcccaacacccttaaagtatattatatttcttaaaagtgaaaaaaaaaactaatctGAGAGCTCACTGGACTTCACCTAAtgactattttatttttctattaaATTTTATTGGTCAGTCAGTTTGCCTTGATCTAATCTCTTATTGTTTATAGCAGTGAAGAGTACCGTAGCACAATTCTGCATAAAGTCTTAATTATGACCAATAATTTCTGTAACACAATACAGATTTTAATAATAGATTTGAAGTAAATCCTTAGGAAACCTCTGGGTTTATGTTGTGTTAAGAAACTAGATAACCTAAAGTAATCCTTTAgcctttcttataaaaaataaaataaagagcaATGAAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RE08	F-box only protein 22 OS=Pongo abelii OX=9601 GN=FBXO22 PE=2 SV=1
Q78JE5	F-box only protein 22 OS=Mus musculus OX=10090 GN=Fbxo22 PE=1 SV=2
Q8NEZ5	F-box only protein 22 OS=Homo sapiens OX=9606 GN=FBXO22 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003074 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08495 all species →	FIST	FIST N domain	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF10442 all species →	FIST_C	FIST C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR013702 all species →	Domain	FIST domain, N-terminal	Interproscan
IPR019494 all species →	Domain	FIST, C-domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14939 all species →	F-BOX ONLY PROTEIN 22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10302	FBXO22; F-box protein 22	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.