Gene detail

Detailed information of XP_032236441.2 in Nematostella vectensis

Genomic Location: NC_064036.1:7850028...7868540
NR annotation: XP_032236441.2, neuralized-like protein 4 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5511256

ATGGCGGCTTCGTGCGAATTTCACGAGCGTCATGGGAGTTTGATTTTTTTGAGCAATGGAAACCGAACCGCCCGACGACGGAACCCAAGCGCAGAATTTAACAACGGACTAGTATTCACTAAACATATGCTCGGTCCCTCAGAGCTCTTAGAAGTACGAATAGATCGAAAAATCACCAACTGGTCTGGATCTATGGCTATCGGTGTCACTACCGCTAACCCAAGCATGATAGAAATTCCATCCTCTGCAACAGGCCTAAAAAATGGCTACTGGATTATGTCGGGGATGTCTGTAGTAAAAAATGGTACTGCAATCTTAGATAGCTATGGTACAGACTTGGATGAGCTGACTGAAGGTGACAGAGTTGGGGTTCTTAGGACTGGGGATGGTTGCTTACATTTCTATGTGAATGGTAAAGACTTGGGGGTGGCAGCCAGCGAAATACCAGGAAATCTTTATGGTGTTGTCGATCTGTATGGAAAATGCGTAGAGGTTTCTGTGTATTCTCATTTCAAGCCAAGGGAAGGCATGGTACCAAGCCCGGTGCAATCAACAGCATCTGTTGTGTTCCACCCTCACTGTGGATCACTTGTTCAACTGGGGAATCGTAACAGAACAGCAGAGAGACAGTTTCCTGAAGAGGAATTCAAGAACTCTGTTGTGTTGACAAATCAGCCCTTAAGAGATAATGAATTATTTGAAGTTGTTGTAGAAAAGTTGACTGACATGTGGGCTGGGTCTCTCGAAGTTGGAATCACCTCCCATAATCCTTTACAAATTGTGCTACCACCGACCATGACCAGTATGACGTCAGGGGCATGGATGTGGAGTGGCACGTCAATTATCATTAATGGACAAGAAGTCAGAAGTGATTATAGTGAATTAAGTCTAGAGTCAATAAAGGCTGGTGACAAAGTAGGAATTTTGAAGACAGCTGATGGAACTGTTAGTTTTTACTTAAATGGTGTCTGCATGGGCGTGGCTGCCGATGATATCCCGCCTGGGGTGTTTGGGGTGGTGGATCTGTACGGCGCGGCTGTCAGGGTATCTGTAGTCAGTGCTGACACTTCTAATGAATTGGAGAATGAGGAAGAACAGGCCACTGCGCTTGTTGGCGCAACTTGTGACACTGAAGATGACTCTCCCGATGATGCTCCACTGCTTTTCAGTTCCCGATGTGGAAAGTCTGTCCGCCTAATGAATGGAAATTATACTGCCTTTCGACCAAGGGCCCTTGAAGAGTTCAACAATGCAGTTGTGCTGACAAACCGACCCATTAAGCACGGGGAACTATTTGAGGTTTATGTCGACCGCCAACTGGACAAATGGGCAGGGTCACTAGAAATTGGCCTAACTACCCATAACCCAGCGACACTAGAACTTCCAGCAACCATCACAAACTTGATGACAGGTGCATGGGTCATGTCAGGTGGCGGGATGATGAAGAATGGTGTGACCACTATAGAGACCTATGGAAGAAATCTTGATGATCTTAAGGCTGGTGATAGAGTTGGGTTGGTTTACAAAGAGGACGGCTCGCTGAACTTCTTCATTAATGGTGAAGACATGGGACTTGCAGCACAAGATATTCCAGTGGTTACCCCAGTCTATGGTATGGTGGATCTCTATGGTAGATCAGCACAAGCTACCATCACCAACGGACGACCCAGAGAGGACATACCAGAAGGGGAACCTGCGGTTACGAGCACTGGCACATCAACAAGAAGCGAAACACCTCTTCCCCATGCTCCCGCAAGTACTGCCGCTGTACCTAACGACAACTGGTTCACCTTCAGTAGTTTCCATGGCGACCAAGTAGTCATCAGTCATGACCACCGCAACGCCATCAGAGTTAATCCCCTAGTGGAGTTCAACAATGCTATTGTGATGAGCCAGCGGCCACTTCGTGATGACGAGATGTTTGAGATCATTATTGAGAAGCAGGTTGATAGATGGTCAGGCTCGCTGGAAGCAGGTGTGACCAGCATTGCACCAGACAAGCTCAGCTTTCCCAACACCATCACGGATCTGGACCATGATACCTGGATGCTTTCTGGTTCATCAGTGCTCCAGGATGGCGCCACTATTTTGAATGGTTATGGCTGCGACCTGGACAAGCTCAAGGAGAACTTCCGCCTGGGAATCATGCGTAAAGCTGACGGATCCCTGCACTACTTTGTCAACGGCGAGGACTGCGGGTCAGCGGCCTCCTCTGTGCCAGCAGGTGTGTATGCTATTATTGACCTGTACGGTCAGTGTGTACAAGTGTCTGTGTACGACGAAGACTATGTGGAGCAGCAAAAGCTTCCCTCCTCCCACCCCTCCCAAGAGGAATCCCGAGCACTTTCTGTCCCCCCTACAGTACCCCCTGTCAGAACGGACACACCCGACGTCATCCCAGGTGGTGTCCCACATGGCTTCCATCCTTGCTGCGGCAAGAACGTCTCTCTTGAGAATAGCCGCTGGACAGCTACTCGATGTCGCGACTTCAGCAATGCCTTGTTGTTTAGCGCTAAGCCCCTCCACGATGACGAGATCTTTGAGATTAAAGTAGACCGGCTTAGTAGTCAGTGGTCCGGGTCTCTTGGGATAGGTGTCACGTCTTGCTTGTTGCCCATGTTTAACGTACCCGCCACTGCCAGTGAGTTACGTGACGGAACATGGATCATGGTCGAGTCACGCATTCTCAAGGATGGTGTCACTCTGAAGGAAAACTACGGATGGAGTCTGGATCGCACACAGGTGGGTGCTTCTATTGGTGTTCAAAGGAGGTCAGATGGCACCCTACACATCTATTACAATGGCGAGGATCAGGGCGTTGCTGCTGTAGACGTCCCGAGGATGGTGTTTGCAGTAGTCGACCTTTATGGGAAGGTGGAACAGGTTTCTGTCGTCAGGGATTCAGATACACGAGTCACCGCTACACCAAGAAGCAACAGCGAGGGCGAGCAGCAGCAGAAGGGCCAACAGCTGCAGGCAGAGAAAGACTCGGACGAGGCGGAGACGACGCCAAAGACGAGGTTCTTATTCAGTCGTCACTGTGGACAGCATGTACGTCTTGATAACAGGCGCGTGTCTGCTCGTCGGGTGGCAAGCTATAACTATGGCGTTGTGCTCAGCGATGTACCTTTACTCCACAACGCGCTCTTTCAAATCCGTGTGACTAAGCTAGAGAGCCACTGGTCTGGGTCTCTGATGGTTGGTCTCACAGACCACGATCCCGAGTGCCTGAATCTGCCCTCCACCGCCAACTCCATGAAGATCTGTCCATGGATTGTCGTCAACAAAGCGGTCTATATTAATGGCAACAAGGTCTTCGAAGGCCTGGGTCGAGGGCTTGATGATCTTCGTGTTGGTGATACCGTGGGCCTGATGATCGACACTAGTGCCAGGCTTCATGTTTTTGTCAACGGCGAGGACCAAGGCGTGGTCGCTGAGGACCTGCCGGCCAAGCCTCACATGGTGGTCGACTTGTACGGAAGCTGTCAAGAGGTTTCCATAGTAACGACAGTTGAGCAGGGGCAGCGCGGGGGTGAGGTCGCTAGTGAGGAGAAACTTGCCAGGGGAACAGCAGAGGAGCGGTCCAAGAGCACTTGCGAATACAGGCAAATGTGCGATCGATTCCGACAAAGTCTCGCTATACCAGATGGTTACTTCAACCACGAGTCAAAAGCAAACATATGCTACTGTCAAACGTGCCGCGTCTCCCGCAGTGAGAAAGAATACGAGGTCAGCGGCGATCCCCAAAGACGCTATGCGCTGCCTCTCGGATGGTGCCAGTTTGCGTTAGGACTTCCTCCAAGAGTGCAGTCCTTGCAAGTACTGGAAAAATGGCATGTGGCATTCTACGGGACACAGACCGGCAGCATTCGCCGCATACTCGACACAGGGGATCTACTTATACCGGATTCGAGAAGACGTCGTCAAAGCAGCAAAAAAAATTTTAATAAGGAGAACGAGACTCCTCAGCTGATGATTTCGCCTTCTGTCAAGTGTGCTATATGTAGTTCCACCCAGAACTTAACAAGGTTTCGAGATGGCCCTACTGGCACACTCTGTAACGCACAAGTTGCTTTCCTTGTCCGAGTGAAGCCTGGGTCCTACTGCACTGGCCAGTCGTCGTGCTGTGATCTCAGCAGCAATGAAGCAGTGTCAGATCACAACCTCGACACTCCAGATCTGGAGTGGTATATCAAGGAGAAGGGCACGGTGCTGCTGGCGGCGCTTCTTATTAAGATTGACCCTACTTGA

Transcript

rna-XM_032380550.2

CActtcaaaattgttggtcagCGGTTGAcattgaagaagaaaaaaacatggcggCTTCGTGCGAATTTCACGAGCGTCATGGgagtttgatttttttgaGCAATGGAAACCGAACCGCCCGACGACGGAACCCAAGCGCAGAATTTAACAACGGACTAGTATTCACTAAACATATGCTCGGTCCCTCAGAGCTCTTAGAAGTACGAATAGATCGAAAAATCACCAACTGGTCTGGATCTATGGCTATCGGTGTCACTACCGCTAACCCAAGCATGATAGAAATTCCATCCTCTGCAACAGGCCTAAAAAATGGCTACTGGATTATGTCGGGGATGTCTGTAGTAAAAAATGGTACTGCAATCTTAGATAGCTATGGTACAGACTTGGATGAGCTGACTGAAGGTGACAGAGTTGGGGTTCTTAGGACTGGGGATGGTTGCTTACATTTCTATGTGAATGGTAAAGACTTGGGGGTGGCAGCCAGCGAAATACCAGGAAATCTTTATGGTGTTGTCGATCTGTATGGAAAATGCGTAGAGGTTTCTGTGTATTCTCATTTCAAGCCAAGGGAAGGCATGGTACCAAGCCCGGTGCAATCAACAGCATCTGTTGTGTTCCACCCTCACTGTGGATCACTTGTTCAACTGGGGAATCGTAACAGAACAGCAGAGAGACAGTTTCCTGAAGAGGAATTCAAGAACTCTGTTGTGTTGACAAATCAGCCCTTAAGAGATAATGAATTATTTGAAGTTGTTGTAGAAAAGTTGACTGACATGTGGGCTGGGTCTCTCGAAGTTGGAATCACCTCCCATAATCCTTTACAAATTGTGCTACCACCGACCATGACCAGTATGACGTCAGGGGCATGGATGTGGAGTGGCACGTCAATTATCATTAATGGACAAGAAGTCAGAAGTGATTATAGTGAATTAAGTCTAGAGTCAATAAAGGCTGGTGACAAAGTAGGAATTTTGAAGACAGCTGATGGAACTGTTAGTTTTTACTTAAATGGTGTCTGCATGGGCGTGGCTGCCGATGATATCCCGCCTGGGGTGTTTGGGGTGGTGGATCTGTACGGCGCGGCTGTCAGGGTATCTGTAGTCAGTGCTGACACTTCTAATGAATTGGAGAATGAGGAAGAACAGGCCACTGCGCTTGTTGGCGCAACTTGTGACACTGAAGATGACTCTCCCGATGATGCTCCACTGCTTTTCAGTTCCCGATGTGGAAAGTCTGTCCGCCTAATGAATGGAAATTATACTGCCTTTCGACCAAGGGCCCTTGAAGAGTTCAACAATGCAGTTGTGCTGACAAACCGACCCATTAAGCACGGGGAACTATTTGAGGTTTATGTCGACCGCCAACTGGACAAATGGGCAGGGTCACTAGAAATTGGCCTAACTACCCATAACCCAGCGACACTAGAACTTCCAGCAACCATCACAAACTTGATGACAGGTGCATGGGTCATGTCAGGTGGCGGGATGATGAAGAATGGTGTGACCACTATAGAGACCTATGGAAGAAATCTTGATGATCTTAAGGCTGGTGATAGAGTTGGGTTGGTTTACAAAGAGGACGGCTCGCTGAACTTCTTCATTAATGGTGAAGACATGGGACTTGCAGCACAAGATATTCCAGTGGTTACCCCAGTCTATGGTATGGTGGATCTCTATGGTAGATCAGCACAAGCTACCATCACCAACGGACGACCCAGAGAGGACATACCAGAAGGGGAACCTGCGGTTACGAgcactggcacatcaacaagAAGCGAAACACCTCTTCCCCATGCTCCCGCAAGTACTGCCGCTGTACCTAACGACAACTGGTTCACCTTCAGTAGTTTCCATGGCGACCAAGTAGTCATCAGTCATGACCACCGCAACGCCATCAGAGTTAATCCCCTAGTGGAGTTCAACAATGCTATTGTGATGAGCCAGCGGCCACTTCGTGATGACGAGATGTTTGAGATCATTATTGAGAAGCAGGTTGATAGATGGTCAGGCTCGCTGGAAGCAGGTGTGACCAGCATTGCACCAGACAAGCTCAGCTTTCCCAACACCATCACGGATCTGGACCATGATACCTGGATGCTTTCTGGTTCATCAGTGCTCCAGGATGGCGCCACTATTTTGAATGGTTATGGCTGCGACCTGGACAAGCTCAAGGAGAACTTCCGCCTGGGAATCATGCGTAAAGCTGACGGATCCCTGCACTACTTTGTCAACGGCGAGGACTGCGGGTCAGCGGCCTCCTCTGTGCCAGCAGGTGTGTATGCTATTATTGACCTGTACGGTCAGTGTGTACAAGTGTCTGTGTACGACGAAGACTATGTGGAGCAGCAAAAGCTTccctcctcccacccctcccaagAGGAATCCCGAGCACTTTCTGTCCCCCCTACAGTACCCCCTGTCAGAACGGACACACCCGACGTCATCCCAGGTGGTGTCCCACATGGCTTCCATCCTTGCTGCGGCAAGAACGTCTCTCTTGAGAATAGCCGCTGGACAGCTACTCGATGTCGCGACTTCAGCAATGCCTTGTTGTTTAGCGCTAAGCCCCTCCACGATGACGAGATCTTTGAGATTAAAGTAGACCGGCTTAGTAGTCAGTGGTCCGGGTCTCTTGGGATAGGTGTCACGTCTTGCTTGTTGCCCATGTTTAACGTACCCGCCACTGCCAGTGAGTTACGTGACGGAACATGGATCATGGTCGAGTCACGCATTCTCAAGGATGGTGTCACTCTGAAGGAAAACTACGGATGGAGTCTGGATCGCACACAGGTGGGTGCTTCTATTGGTGTTCAAAGGAGGTCAGATGGCACCCTACACATCTATTACAATGGCGAGGATCAGGGCGTTGCTGCTGTAGACGTCCCGAGGATGGTGTTTGCAGTAGTCGACCTTTATGGGAAGGTGGAACAGGTTTCTGTCGTCAGGGATTCAGATACACGAGTCACCGCTACACCAAGAAGCAACAGCGAGGGCGAGCAGCAGCAGAAGGGCCAACAGCTGCAGGCAGAGAAAGACTCGGACGAGGCGGAGACGACGCCAAAGACGAGGTTCTTATTCAGTCGTCACTGTGGACAGCATGTACGTCTTGATAACAGGCGCGTGTCTGCTCGTCGGGTGGCAAGCTATAACTATGGCGTTGTGCTCAGCGATGTACCTTTACTCCACAACGCGCTCTTTCAAATCCGTGTGACTAAGCTAGAGAGCCACTGGTCTGGGTCTCTGATGGTTGGTCTCACAGACCACGATCCCGAGTGCCTGAATCTGCCCTCCACCGCCAACTCCATGAAGATCTGTCCATGGATTGTCGTCAACAAAGCGGTCTATATTAATGGCAACAAGGTCTTCGAAGGCCTGGGTCGAGGGCTTGATGATCTTCGTGTTGGTGATACCGTGGGCCTGATGATCGACACTAGTGCCAGGCTTCATGTTTTTGTCAACGGCGAGGACCAAGGCGTGGTCGCTGAGGACCTGCCGGCCAAGCCTCACATGGTGGTCGACTTGTACGGAAGCTGTCAAGAGGTTTCCATAGTAACGACAGTTGAGCAGGGGCAGCGCGGGGGTGAGGTCGCTAGTGAGGAGAAACTTGCCAGGGGAACAGCAGAGGAGCGGTCCAAGAGCACTTGCGAATACAGGCAAATGTGCGATCGATTCCGACAAAGTCTCGCTATACCAGATGGTTACTTCAACCACGAGTCAAAAGCAAACATATGCTACTGTCAAACGTGCCGCGTCTCCCGCAGTGAGAAAGAATACGAGGTCAGCGGCGATCCCCAAAGACGCTATGCGCTGCCTCTCGGATGGTGCCAGTTTGCGTTAGGacTTCCTCCAAGAGTGCAGTCCTTGCAAGTACTGGAAAAATGGCATGTGGCATTCTACGGGACACAGACCGGCAGCATTCGCCGCATACTCGACACAGGGGATCTACTTATACCGGATTCGAGAAGACGTCGTCAAAgcagcaaaaaaaattttaataaGGAGAACGAGACTCCTCAGCTGATGATTTCGCCTTCTGTCAAGTGTGCTATATGTAGTTCCACCCAGAACTTAACAAGGTTTCGAGATGGCCCTACTGGCACACTCTGTAACGCACAAGTTGCTTTCCTTGTCCGAGTGAAGCCTGGGTCCTACTGCACTGGCCAGTCGTCGTGCTGTGATCTCAGCAGCAATGAAGCAGTGTCAGATCACAACCTCGACACTCCAGATCTGGAGTGGTATATCAAGGAGAAGGGCACGGTGCTGCTGGCGGCGCTTCTTATTAAGATTGACCCTACTTGAAAATCACCCTATAGATCTAATGAAACACCCAGTTGTTATACTACAGATAACTGAGAGAGCACCCGGCTCACCCTACAGCTATCATAGGACACCCTGTTGTCACCCTAGATGTACCATTAGACACCATGTGTTCACCTAACAAGATACCATGGGACACGTGGCCACCCTACAGATATCTTATGACACCCTGTTGTCACCCTAGATGTACCATTAGACACCATGTGTTCACCTAACAAGATACCATGGGACACGTGGTCACCCTACAGATATCATAGGACACCCTGTTGTCACCCTAGATATACGACACCATGTGTTCACCTAACAAGATACCATGGGACACTTGGCCACCCTACAGATATCATAGGACACCCTGTTGTCACCCTAGATATACGACACCATGTGTTCACCTAACAAGATACCATGGGACACTTGGCCACCCTACAGCTGTCATAGGACACCCTGTTGTCACCCTAGATGAACGAAACCATGTGATCACCTAACAAGATACCATGGGACACTTTGTTGCCACCCTACAGATATTATAGAACACCCAGTGGTCACCCTACAGCTATCATAGAACACCCTGTTGTCACCCTAGATGTACCATAAGACACCGTGTGTTCACCTAACAAGATACCATGGGACACGTGGCCACTCTACAGCTATCATAGGACACCCTGTTGTCACCCTACAGATGGCATGGGACAACCTATAGTCACCCTACATATACCATTAGTTTTAAATGTTGTGGTTACTCTACGAATACATTAGAACTTTTGTGGTCATACTATTCTAGGTCACCAAAGGGATAATAACTGAAGTGTGCTTAGATACCTAAGGGTCTGTTAAGACACATAAGCACACTTATTGCCAGAATACAGATCACTTTTTTGGTCACAGCAGAGATAAGGTAAGGAGACAGTCTCCAATGTAAGACATAATTGAATACGAAAACTTTAGTGAGATGAATTGGTTCAACATGAATATATTATAAGTTGACGCTAAAATAATAGTAGAGATACGTGCTACCCTGGCCACCATTACAAGGTTTTCTTAAGAAACTACCCAAGGTGGCgatggtagcgcgcgtcgcactatattTTATTGCaacaataggccattccaggtATAAGTTTGCACGCGcattaccatagaaacctacctcaactaccagaatgcagcgcgcgcatttttaagcttgcaccaggtaggtttccatggtgagtgcgcgcgcatgcttatagctggaatggcctattgcaACAAGTATTTGCTCCTCGCAGAACTTGTTGCCTGTTGAGTTCGAGAGAAACCCTCTGGTTTTATTTGCACAAGAATTTatgaataataatattaatgtaCCAAAGTGaataaaaattgtaaaaataaaagatcAAACTTGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L0Y2	Neuralized-like protein 4 OS=Xenopus tropicalis OX=8364 GN=neurl4 PE=2 SV=1
Q96JN8	Neuralized-like protein 4 OS=Homo sapiens OX=9606 GN=NEURL4 PE=1 SV=2
Q5NCX5	Neuralized-like protein 4 OS=Mus musculus OX=10090 GN=Neurl4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006128 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07177 all species →	Neuralized	Neuralized	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006573 all species →	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR037962 all species →	Family	Neuralized	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12429 all species →	NEURALIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16777	NEURL4; neuralized-like protein 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032236441.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

7.8Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	4.45	5.76
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.53	4.86
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.35	2.53
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	4.77	5.81
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.26	3.72
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.90	5.70
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.07	5.17
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.94	5.59
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.37	5.90
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	3.60	5.58
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	4.18	4.97
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.06	4.81
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	5.72	7.79
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.04	6.12
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.65	5.62
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.58	4.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.76
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.88
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.71
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.86
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.04
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.70
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.53
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.48
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.04
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.81
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.21
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.28
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.72
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.50
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.55
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	5.70
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.17
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.04
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.59
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.19
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.06
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.90
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.20
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.58
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.24
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.97
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.91
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.67
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.81
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.37
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.79
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.73
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.64
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.12
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.62
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.33
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.73
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.